LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-122C5.3
hsa-miR-143-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514586
Biotype: antisense
Gene id: ENSG00000250629
Gene Name: RP11-122C5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-187
0.018
1
7mer
117-144
0.008
1
RP11-219G17.4
hsa-miR-143-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000374945
Biotype: lincRNA
Gene id: ENSG00000204277
Gene Name: RP11-219G17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2658-2677
0.018
0
6mer
2589-2594
0.004
2
6mer
1142-1166
0.002
2
6mer
1371-1387
0.001
0
RP11-20A20.2
hsa-miR-143-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602851
Biotype: lincRNA
Gene id: ENSG00000269957
Gene Name: RP11-20A20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
658-683
0.026
2
RP5-1185I7.1
hsa-miR-143-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454234
Biotype: antisense
Gene id: ENSG00000232756
Gene Name: RP5-1185I7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1249-1266
0.016
1
7mer
1775-1798
0.010
0
MIMT1
hsa-miR-143-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_024059.1
Biotype: lincRNA
Gene id: NR_024059.1 (gene)
Gene Name: MIMT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
968-986
0.026
3
RP11-456O19.4
hsa-miR-143-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000593282
Biotype: lincRNA
Gene id: ENSG00000267712
Gene Name: RP11-456O19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
543-565
0.026
0
RP11-742B18.1
hsa-miR-143-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506480
Biotype: antisense
Gene id: ENSG00000249001
Gene Name: RP11-742B18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
779-794
0.026
1
TTN-AS1
hsa-miR-143-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588804
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
344-363
0.013
2
6mer
720-736
0.007
8
6mer
152-176
0.006
4
XLOC_011029
hsa-miR-143-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022749
Biotype: transcript isomorph
Gene id: XLOC_011029
Gene Name: XLOC_011029
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-219
0.022
3
6mer
257-278
0.003
0
MIMT1
hsa-miR-143-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599641
Biotype: lincRNA
Gene id: ENSG00000268654
Gene Name: MIMT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
968-986
0.025
3
KB-1608C10.2
hsa-miR-143-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000510185
Biotype: antisense
Gene id: ENSG00000254307
Gene Name: KB-1608C10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-41
0.021
0
6mer
270-286
0.004
1
FAM95B1
hsa-miR-143-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000455995
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-201
0.020
0
7mer
1542-1560
0.003
0
6mer
2954-2980
0.002
0
RP11-702B10.2
hsa-miR-143-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000609911
Biotype: lincRNA
Gene id: ENSG00000273415
Gene Name: RP11-702B10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
747-765
0.025
2
XLOC_013037
hsa-miR-143-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027513
Biotype: transcript isomorph
Gene id: XLOC_013037
Gene Name: XLOC_013037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1863-1868
0.015
5
6mer
1994-2009
0.011
10
AC073254.1
hsa-miR-143-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597193
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-306
0.020
1
6mer
490-505
0.006
1
LINC00971
hsa-miR-143-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484892
Biotype: lincRNA
Gene id: ENSG00000242641
Gene Name: LINC00971
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6474-6494
0.009
1
7mer
772-789
0.008
0
7mer
208-233
0.007
0
6mer
2608-2615
0.002
3
RP11-819C21.1
hsa-miR-143-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561746
Biotype: lincRNA
Gene id: ENSG00000261098
Gene Name: RP11-819C21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4063-4083
0.015
1
7mer
1841-1861
0.006
2
6mer
3667-3690
0.002
Not Conserved
6mer
1726-1747
0.001
0
6mer
1675-1698
0.001
1
RP11-364P22.1
hsa-miR-143-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000455598
Biotype: lincRNA
Gene id: ENSG00000234111
Gene Name: RP11-364P22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-89
0.025
0
RP11-1028N23.2
hsa-miR-143-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548457
Biotype: lincRNA
Gene id: ENSG00000258280
Gene Name: RP11-1028N23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-263
0.021
2
6mer
25-47
0.005
2
PCBP1-AS1
hsa-miR-143-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000600002
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-134
0.022
0
6mer
571-593
0.004
0
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