LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-397C18.2
hsa-miR-143-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451617
Biotype: antisense
Gene id: ENSG00000235410
Gene Name: RP11-397C18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
698-720
0.026
1
MAGI2-AS3
hsa-miR-143-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000621901
Biotype: antisense
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-570
0.026
Not Conserved
LINC00680
hsa-miR-143-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
360-382
0.026
0
MAGI2-AS3
hsa-miR-143-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000612949
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-465
0.026
Not Conserved
RP11-478P10.1
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109900.1
Biotype: lincRNA
Gene id: NR_109900.1 (gene)
Gene Name: RP11-478P10.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
703-725
0.009
0
8mer
1554-1573
0.007
1
6mer
82-105
0.006
3
6mer
1654-1668
0.002
3
6mer
2543-2559
0.002
0
RP11-417B4.2
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423942
Biotype: antisense
Gene id: ENSG00000230826
Gene Name: RP11-417B4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
511-527
0.014
2
7mer
400-411
0.012
Not Conserved
ATP1A1OS
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027646.1
Biotype: antisense
Gene id: NR_027646.1 (gene)
Gene Name: ATP1A1OS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-82
0.016
7
6mer
4-26
0.009
8
RP11-176F3.7
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000414426
Biotype: antisense
Gene id: ENSG00000230925
Gene Name: RP11-176F3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
555-579
0.020
1
7mer
722-741
0.006
1
XLOC_013927
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028746
Biotype: transcript isomorph
Gene id: XLOC_013927
Gene Name: XLOC_013927
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
535-553
0.026
1
CTD-2232E5.2
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514662
Biotype: lincRNA
Gene id: ENSG00000250831
Gene Name: CTD-2232E5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-87
0.026
0
XLOC_011817
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024500
Biotype: transcript isomorph
Gene id: XLOC_011817
Gene Name: XLOC_011817
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-63
0.026
0
XLOC_003175
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006552
Biotype: transcript isomorph
Gene id: XLOC_003175
Gene Name: XLOC_003175
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
596-615
0.022
3
6mer
589-615
0.004
2
RP11-478P10.1
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510444
Biotype: lincRNA
Gene id: ENSG00000249584
Gene Name: RP11-478P10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
707-729
0.009
0
8mer
1558-1577
0.007
1
6mer
86-109
0.006
3
6mer
1658-1672
0.002
3
6mer
2547-2563
0.002
0
AC007796.1
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585336
Biotype: antisense
Gene id: ENSG00000267662
Gene Name: AC007796.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-238
0.019
0
7mer
217-233
0.007
0
RP11-69H14.6
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000610819
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-372
0.026
3
AC008079.10
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3209-3216
0.009
0
6mer
19855-19878
0.003
1
7mer
18171-18185
0.003
3
7mer
17808-17832
0.002
0
6mer
985-999
0.002
1
6mer
17975-17998
0.002
1
6mer
14555-14572
0.002
0
6mer
18709-18724
0.001
1
6mer
13003-13026
0.001
0
6mer
16823-16846
0.001
0
NRG1-IT1
hsa-miR-143-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_104157.1
Biotype: sense
Gene id: NR_104157.1 (gene)
Gene Name: NRG1-IT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-129
0.026
0
XLOC_000218
hsa-miR-143-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000960
Biotype: transcript isomorph
Gene id: XLOC_000218
Gene Name: XLOC_000218
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-43
0.026
3
RP11-809C18.3
hsa-miR-143-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451601
Biotype: antisense
Gene id: ENSG00000225140
Gene Name: RP11-809C18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1638-1643
0.014
0
7mer
462-479
0.007
0
6mer
1442-1460
0.003
0
6mer
1235-1250
0.002
0
RP11-202D1.3
hsa-miR-143-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581198
Biotype: lincRNA
Gene id: ENSG00000263438
Gene Name: RP11-202D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
526-541
0.026
1
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