LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-774O3.1
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503186
Biotype: lincRNA
Gene id: ENSG00000248986
Gene Name: RP11-774O3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-150
0.026
1
AL589986.2
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429230
Biotype: antisense
Gene id: ENSG00000226716
Gene Name: AL589986.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-485
0.020
2
7mer
401-427
0.005
4
RP5-1027G4.3
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000319682
Biotype: antisense
Gene id: ENSG00000179447
Gene Name: RP5-1027G4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-97
0.026
6
LINC01272
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000425497
Biotype: lincRNA
Gene id: ENSG00000224397
Gene Name: LINC01272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1604-1621
0.009
1
7mer
1524-1534
0.007
1
6mer
1945-1961
0.006
1
7mer
459-471
0.003
1
XLOC_002760
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006154
Biotype: transcript isomorph
Gene id: XLOC_002760
Gene Name: XLOC_002760
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1287-1305
0.024
2
6mer
852-866
0.002
1
SNHG1
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000537869
Biotype: lincRNA
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
912-937
0.026
2
LINC01224
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1991-2014
0.014
Not Conserved
6mer
1649-1665
0.008
1
6mer
1875-1892
0.004
0
RP11-431N15.2
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000446028
Biotype: lincRNA
Gene id: ENSG00000230105
Gene Name: RP11-431N15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-446
0.026
1
RP11-22P4.1
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532947
Biotype: lincRNA
Gene id: ENSG00000255322
Gene Name: RP11-22P4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
71-95
0.026
1
LINC00343
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608426
Biotype: lincRNA
Gene id: ENSG00000226620
Gene Name: LINC00343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
593-609
0.015
1
7mer
411-428
0.011
0
XLOC_009141
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019307
Biotype: transcript isomorph
Gene id: XLOC_009141
Gene Name: XLOC_009141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
356-363
0.026
0
RP11-806L2.2
hsa-miR-143-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585150
Biotype: antisense
Gene id: ENSG00000266456
Gene Name: RP11-806L2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1827-1844
0.022
0
6mer
1614-1632
0.004
1
LINC01141
hsa-miR-143-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418743
Biotype: lincRNA
Gene id: ENSG00000236963
Gene Name: LINC01141
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-585
0.026
0
XLOC_005051
hsa-miR-143-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010531
Biotype: transcript isomorph
Gene id: XLOC_005051
Gene Name: XLOC_005051
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
100-117
0.026
Not Conserved
LINC01224
hsa-miR-143-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601338
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
170-193
0.017
Not Conserved
6mer
54-71
0.009
0
AC025171.1
hsa-miR-143-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505541
Biotype: antisense
Gene id: ENSG00000215068
Gene Name: AC025171.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
305-318
0.026
0
NRG1-IT1
hsa-miR-143-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520444
Biotype: sense_intronic
Gene id: ENSG00000253974
Gene Name: NRG1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-116
0.026
0
XLOC_003092
hsa-miR-143-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005763
Biotype: transcript isomorph
Gene id: XLOC_003092
Gene Name: XLOC_003092
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-44
0.026
0
RP11-63A11.1
hsa-miR-143-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508911
Biotype: antisense
Gene id: ENSG00000250781
Gene Name: RP11-63A11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-209
0.026
1
LINC00343
hsa-miR-143-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000598478
Biotype: lincRNA
Gene id: ENSG00000226620
Gene Name: LINC00343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
494-510
0.014
1
7mer
312-329
0.011
0
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