LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-736P16.1
hsa-miR-143-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554181
Biotype: lincRNA
Gene id: ENSG00000259061
Gene Name: RP11-736P16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-319
0.071
5
RP11-845M18.7
hsa-miR-143-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549788
Biotype: antisense
Gene id: ENSG00000257830
Gene Name: RP11-845M18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-235
0.068
2
6mer
497-519
0.003
0
RP5-944M2.3
hsa-miR-143-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000397346
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-245
0.048
1
9mer
574-587
0.018
1
7mer
1517-1536
0.005
1
XLOC_010262
hsa-miR-143-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020998
Biotype: transcript isomorph
Gene id: XLOC_010262
Gene Name: XLOC_010262
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
343-363
0.055
1
7mer
1657-1680
0.007
1
6mer
77-97
0.006
1
6mer
1025-1049
0.002
1
AC006460.2
hsa-miR-143-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428032
Biotype: antisense
Gene id: ENSG00000228509
Gene Name: AC006460.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
403-418
0.050
1
7mer
38-52
0.020
0
CTC-550B14.7
hsa-miR-143-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593060
Biotype: antisense
Gene id: ENSG00000267265
Gene Name: CTC-550B14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
669-693
0.069
0
RGS5
hsa-miR-143-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449680
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-140
0.067
4
6mer
728-750
0.002
Not Conserved
LINC01344
hsa-miR-143-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608183
Biotype: lincRNA
Gene id: ENSG00000228918
Gene Name: LINC01344
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2603-2616
0.059
2
7mer
2224-2251
0.008
0
6mer
1985-2006
0.002
0
RGS5
hsa-miR-143-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427213
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-96
0.069
4
LOC100505812
hsa-miR-143-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_040599.1
Biotype: sense
Gene id: NR_040599.1 (gene)
Gene Name: LOC100505812
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1914-1931
0.043
0
7mer
1509-1532
0.020
0
6mer
1345-1363
0.006
1
CTC-241F20.3
hsa-miR-143-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602172
Biotype: antisense
Gene id: ENSG00000268001
Gene Name: CTC-241F20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1914-1931
0.043
0
7mer
1509-1532
0.020
0
6mer
1345-1363
0.006
1
XLOC_008927
hsa-miR-143-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018591
Biotype: transcript isomorph
Gene id: XLOC_008927
Gene Name: XLOC_008927
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
434-456
0.051
1
7mer
875-902
0.013
0
6mer
328-345
0.004
1
CTA-941F9.10
hsa-miR-143-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
20149-20174
0.029
1
9mer
5294-5316
0.012
1
8mer
8670-8687
0.008
1
6mer
93-108
0.004
Not Conserved
6mer
7517-7532
0.002
1
6mer
13841-13866
0.002
0
6mer
6012-6028
0.002
1
6mer
4532-4558
0.002
0
6mer
6254-6275
0.001
1
6mer
19289-19306
0.001
1
6mer
21305-21325
0.001
1
6mer
12905-12929
0.001
1
6mer
18203-18229
0.001
1
6mer
18222-18237
0.001
2
6mer
10068-10092
0.001
0
AC005154.6
hsa-miR-143-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9360-9377
0.010
1
8mer
5921-5935
0.009
Not Conserved
7mer
6562-6586
0.009
0
7mer
1139-1165
0.008
1
7mer
9266-9290
0.006
4
7mer
11637-11661
0.005
Not Conserved
7mer
8839-8862
0.004
1
8mer
7242-7248
0.004
1
7mer
11931-11949
0.004
0
6mer
12093-12109
0.002
1
6mer
4091-4116
0.002
0
6mer
2100-2108
0.001
0
6mer
8286-8303
0.001
0
6mer
7247-7271
0.001
1
6mer
8453-8472
0.001
1
CASC2
hsa-miR-143-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_026941.1
Biotype: lincRNA
Gene id: NR_026941.1 (gene)
Gene Name: CASC2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2271-2294
0.068
5
RP5-944M2.3
hsa-miR-143-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544759
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-320
0.043
1
9mer
525-538
0.025
1
XLOC_009075
hsa-miR-143-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019858
Biotype: transcript isomorph
Gene id: XLOC_009075
Gene Name: XLOC_009075
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
369-383
0.059
2
7mer
264-273
0.009
1
RP11-34P13.13
hsa-miR-143-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2961-2983
0.044
1
7mer
153-176
0.020
0
6mer
94-118
0.004
0
CASC2
hsa-miR-143-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454781
Biotype: antisense
Gene id: ENSG00000177640
Gene Name: CASC2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2088-2111
0.066
5
RP11-15A1.9
hsa-miR-143-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000619673
Biotype: sense_intronic
Gene id: ENSG00000278492
Gene Name: RP11-15A1.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-64
0.066
1
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