LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
TTTY2B
hsa-miR-143-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000450591
Biotype: lincRNA
Gene id: ENSG00000212856
Gene Name: TTTY2B
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1946-1955
0.009
0
7mer
2913-2929
0.008
Not Conserved
8mer
1084-1104
0.006
Not Conserved
6mer
157-170
0.003
Not Conserved
LINC00608
hsa-miR-143-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015390.1
Biotype: lincRNA
Gene id: NR_015390.1 (gene)
Gene Name: LINC00608
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
907-929
0.026
2
AC011288.2
hsa-miR-143-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000411542
Biotype: lincRNA
Gene id: ENSG00000229618
Gene Name: AC011288.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
187-210
0.026
0
XLOC_007808
hsa-miR-143-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016443
Biotype: transcript isomorph
Gene id: XLOC_007808
Gene Name: XLOC_007808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4807-4828
0.022
1
6mer
6476-6499
0.003
1
6mer
5748-5754
0.002
2
BMS1P4
hsa-miR-143-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000580790
Biotype: processed_transcript
Gene id: ENSG00000271816
Gene Name: BMS1P4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-689
0.022
0
7mer
909-930
0.004
0
RP11-983C2.2
hsa-miR-143-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544727
Biotype: lincRNA
Gene id: ENSG00000249873
Gene Name: RP11-983C2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-160
0.026
2
RP11-76K13.3
hsa-miR-143-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581502
Biotype: antisense
Gene id: ENSG00000264475
Gene Name: RP11-76K13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-120
0.020
1
6mer
64-88
0.003
0
6mer
240-256
0.003
1
RP11-335K5.2
hsa-miR-143-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559120
Biotype: antisense
Gene id: ENSG00000259555
Gene Name: RP11-335K5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1928-1953
0.021
Not Conserved
6mer
1499-1521
0.005
3
FAM170B-AS1
hsa-miR-143-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000442525
Biotype: antisense
Gene id: ENSG00000234736
Gene Name: FAM170B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-248
0.019
2
6mer
517-524
0.004
1
6mer
1539-1558
0.003
0
LINC00824
hsa-miR-143-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517583
Biotype: lincRNA
Gene id: ENSG00000254275
Gene Name: LINC00824
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
274-292
0.012
2
7mer
329-356
0.011
0
6mer
622-642
0.003
2
APELA
hsa-miR-143-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_038825.1
Biotype: sense
Gene id: NR_038825.1 (gene)
Gene Name: APELA
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2450-2469
0.022
1
6mer
745-764
0.004
1
LINC01272
hsa-miR-143-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000622604
Biotype: lincRNA
Gene id: ENSG00000224397
Gene Name: LINC01272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1402-1419
0.009
1
7mer
1322-1332
0.008
1
6mer
1743-1759
0.005
1
7mer
257-269
0.004
1
RP11-456O19.4
hsa-miR-143-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589447
Biotype: lincRNA
Gene id: ENSG00000267712
Gene Name: RP11-456O19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-462
0.026
0
RP11-374M1.2
hsa-miR-143-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000399894
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
503-517
0.026
0
RP11-700N1.1
hsa-miR-143-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505122
Biotype: lincRNA
Gene id: ENSG00000250392
Gene Name: RP11-700N1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-494
0.026
0
AF001548.5
hsa-miR-143-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574212
Biotype: antisense
Gene id: ENSG00000263335
Gene Name: AF001548.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-471
0.014
10
8mer
583-605
0.008
0
6mer
682-707
0.005
1
RP11-567J20.1
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523038
Biotype: lincRNA
Gene id: ENSG00000253702
Gene Name: RP11-567J20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
322-341
0.026
1
CTD-3229J4.1
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564852
Biotype: lincRNA
Gene id: ENSG00000261555
Gene Name: CTD-3229J4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1258-1283
0.018
1
6mer
131-135
0.005
0
6mer
180-198
0.003
0
RP11-5C23.2
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609134
Biotype: antisense
Gene id: ENSG00000273183
Gene Name: RP11-5C23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-182
0.026
1
RP11-549J18.1
hsa-miR-143-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505668
Biotype: sense_intronic
Gene id: ENSG00000251023
Gene Name: RP11-549J18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-188
0.011
0
8mer
2340-2364
0.006
1
6mer
679-705
0.004
0
6mer
2394-2417
0.003
2
6mer
2658-2676
0.002
1
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