LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-143-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
LINC00882
hsa-miR-143-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484698
Biotype: lincRNA
Gene id: ENSG00000242759
Gene Name: LINC00882
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2238-2254
0.008
Not Conserved
7mer
1552-1576
0.008
0
6mer
133-151
0.004
1
6mer
2530-2543
0.003
1
6mer
1720-1743
0.003
0
DGCR9
hsa-miR-143-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609630
Biotype: lincRNA
Gene id: ENSG00000273032
Gene Name: DGCR9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2140-2158
0.027
0
SATB1-AS1
hsa-miR-143-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000456253
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-72
0.027
4
RP11-1007G5.2
hsa-miR-143-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525706
Biotype: antisense
Gene id: ENSG00000254588
Gene Name: RP11-1007G5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1288-1315
0.020
5
6mer
626-646
0.004
2
6mer
159-180
0.003
0
SRD5A3-AS1
hsa-miR-143-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608086
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
719-744
0.026
0
RP11-573D15.8
hsa-miR-143-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000354642
Biotype: antisense
Gene id: ENSG00000197099
Gene Name: RP11-573D15.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
116-138
0.026
0
TTN-AS1
hsa-miR-143-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588257
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-162
0.015
5
8mer
224-244
0.011
3
CTD-3020H12.4
hsa-miR-143-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000605980
Biotype: antisense
Gene id: ENSG00000271717
Gene Name: CTD-3020H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-67
0.026
0
XLOC_007277
hsa-miR-143-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015915
Biotype: transcript isomorph
Gene id: XLOC_007277
Gene Name: XLOC_007277
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-100
0.026
3
RP11-351M8.1
hsa-miR-143-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560560
Biotype: antisense
Gene id: ENSG00000259649
Gene Name: RP11-351M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-469
0.017
1
6mer
274-292
0.006
4
7mer
237-249
0.004
0
CDKN2B-AS1
hsa-miR-143-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000584351
Biotype: antisense
Gene id: ENSG00000240498
Gene Name: CDKN2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-187
0.024
1
6mer
1630-1645
0.003
2
RP11-383M4.6
hsa-miR-143-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585776
Biotype: lincRNA
Gene id: ENSG00000267559
Gene Name: RP11-383M4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1910-1934
0.020
0
6mer
1774-1789
0.007
4
TTN-AS1
hsa-miR-143-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589842
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-162
0.015
5
8mer
224-244
0.011
3
FAM66C
hsa-miR-143-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454799
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1794-1811
0.026
0
RP11-519G16.5
hsa-miR-143-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559553
Biotype: antisense
Gene id: ENSG00000259342
Gene Name: RP11-519G16.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-213
0.022
Not Conserved
6mer
214-239
0.003
2
6mer
470-494
0.002
0
XLOC_005514
hsa-miR-143-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012001
Biotype: transcript isomorph
Gene id: XLOC_005514
Gene Name: XLOC_005514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1652-1677
0.011
0
7mer
1105-1119
0.008
4
6mer
817-821
0.003
0
6mer
1486-1509
0.002
0
7mer
1118-1133
0.002
2
XLOC_001195
hsa-miR-143-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001810
Biotype: transcript isomorph
Gene id: XLOC_001195
Gene Name: XLOC_001195
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
869-886
0.007
2
7mer
6391-6417
0.003
0
7mer
4437-4451
0.003
1
7mer
7617-7640
0.003
0
6mer
2072-2085
0.002
1
6mer
5182-5203
0.002
3
6mer
8484-8500
0.002
1
6mer
2541-2564
0.001
2
6mer
3730-3753
0.001
0
RP13-81N3.2
hsa-miR-143-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540188
Biotype: lincRNA
Gene id: ENSG00000256888
Gene Name: RP13-81N3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-410
0.026
1
CTC-459F4.3
hsa-miR-143-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
354-370
0.015
0
6mer
371-386
0.012
0
XLOC_007058
hsa-miR-143-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014979
Biotype: transcript isomorph
Gene id: XLOC_007058
Gene Name: XLOC_007058
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
497-513
0.015
0
8mer
944-971
0.005
0
6mer
664-687
0.003
1
6mer
388-400
0.003
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept