LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
CLSTN2-AS1
hsa-miR-143-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000513309
Biotype: antisense
Gene id: ENSG00000250433
Gene Name: CLSTN2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
98-124
0.009
7
6mer
50-64
0.008
6
6mer
43-63
0.006
3
6mer
567-590
0.003
0
6mer
1232-1243
0.001
1
XLOC_003323
hsa-miR-143-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005403
Biotype: transcript isomorph
Gene id: XLOC_003323
Gene Name: XLOC_003323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
360-383
0.022
3
6mer
33-51
0.005
1
FBXL19-AS1
hsa-miR-143-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563777
Biotype: antisense
Gene id: ENSG00000260852
Gene Name: FBXL19-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3470-3488
0.021
0
7mer
1598-1622
0.003
1
6mer
756-773
0.002
0
6mer
839-857
0.001
1
RP11-43N5.1
hsa-miR-143-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542219
Biotype: lincRNA
Gene id: ENSG00000255970
Gene Name: RP11-43N5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2024-2047
0.012
2
7mer
2964-2981
0.009
1
7mer
1243-1255
0.006
1
LINC01426
hsa-miR-143-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420877
Biotype: antisense
Gene id: ENSG00000234380
Gene Name: LINC01426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2591-2615
0.023
1
6mer
1908-1934
0.004
1
RP11-448A19.1
hsa-miR-143-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608694
Biotype: lincRNA
Gene id: ENSG00000273329
Gene Name: RP11-448A19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5083-5100
0.010
1
8mer
3314-3336
0.005
0
7mer
5537-5556
0.003
2
6mer
6867-6888
0.003
2
6mer
6174-6195
0.002
0
7mer
4816-4839
0.002
1
6mer
5322-5343
0.001
5
6mer
5338-5361
0.001
1
WEE2-AS1
hsa-miR-143-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000488785
Biotype: antisense
Gene id: ENSG00000228775
Gene Name: WEE2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1534-1552
0.018
5
6mer
77-98
0.004
1
7mer
1350-1369
0.004
2
LINC01411
hsa-miR-143-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510234
Biotype: lincRNA
Gene id: ENSG00000249306
Gene Name: LINC01411
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-393
0.027
1
EXTL3-AS1
hsa-miR-143-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523789
Biotype: antisense
Gene id: ENSG00000246339
Gene Name: EXTL3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-313
0.023
3
6mer
134-157
0.003
1
XLOC_000454
hsa-miR-143-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001189
Biotype: transcript isomorph
Gene id: XLOC_000454
Gene Name: XLOC_000454
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-31
0.027
1
RP11-706O15.7
hsa-miR-143-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000381105
Biotype: lincRNA
Gene id: ENSG00000205662
Gene Name: RP11-706O15.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
518-542
0.010
2
6mer
292-318
0.007
1
6mer
1175-1198
0.005
1
6mer
1632-1658
0.005
0
XLOC_007868
hsa-miR-143-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016491
Biotype: transcript isomorph
Gene id: XLOC_007868
Gene Name: XLOC_007868
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3870-3895
0.021
0
6mer
5983-6000
0.004
1
6mer
5085-5104
0.001
0
6mer
2016-2043
0.001
0
6mer
3789-3814
0.001
0
PCAT6
hsa-miR-143-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425295
Biotype: antisense
Gene id: ENSG00000228288
Gene Name: PCAT6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
441-454
0.009
2
7mer
472-485
0.008
0
7mer
441-463
0.005
0
6mer
494-498
0.005
0
RP11-415J8.3
hsa-miR-143-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000587696
Biotype: antisense
Gene id: ENSG00000225313
Gene Name: RP11-415J8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
649-663
0.027
2
OR2A1-AS1
hsa-miR-143-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000463561
Biotype: antisense
Gene id: ENSG00000244479
Gene Name: OR2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-147
0.018
3
6mer
6-27
0.009
7
LINC00608
hsa-miR-143-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_024385.1
Biotype: lincRNA
Gene id: NR_024385.1 (gene)
Gene Name: LINC00608
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1383-1405
0.027
2
RP11-379K17.4
hsa-miR-143-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469301
Biotype: antisense
Gene id: ENSG00000239219
Gene Name: RP11-379K17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
361-384
0.022
3
6mer
34-52
0.005
1
RP11-737O24.2
hsa-miR-143-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584431
Biotype: antisense
Gene id: ENSG00000265907
Gene Name: RP11-737O24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-460
0.021
1
6mer
574-584
0.006
4
RP11-240A16.1
hsa-miR-143-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515181
Biotype: lincRNA
Gene id: ENSG00000251329
Gene Name: RP11-240A16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-211
0.027
Not Conserved
CTD-2126E3.4
hsa-miR-143-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600998
Biotype: lincRNA
Gene id: ENSG00000267890
Gene Name: CTD-2126E3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-146
0.027
Not Conserved
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