LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
LINC00174
hsa-miR-143-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000421767
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1825-1844
0.008
1
8mer
2467-2486
0.007
0
6mer
80-103
0.006
0
7mer
2394-2414
0.003
0
7mer
1031-1054
0.002
0
6mer
2216-2233
0.001
0
ZNF561-AS1
hsa-miR-143-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592851
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
565-589
0.015
0
7mer
435-457
0.012
0
USP2-AS1
hsa-miR-143-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000498979
Biotype: antisense
Gene id: ENSG00000245248
Gene Name: USP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
720-744
0.025
1
6mer
634-647
0.002
0
RP11-94B19.4
hsa-miR-143-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577797
Biotype: lincRNA
Gene id: ENSG00000266614
Gene Name: RP11-94B19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-39
0.027
0
XLOC_004399
hsa-miR-143-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009407
Biotype: transcript isomorph
Gene id: XLOC_004399
Gene Name: XLOC_004399
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
424-445
0.013
2
7mer
1593-1610
0.006
3
6mer
2484-2502
0.005
1
7mer
1624-1644
0.003
1
AC012594.1
hsa-miR-143-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000622590
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-230
0.016
0
7mer
523-535
0.007
1
6mer
541-566
0.004
0
RP11-304L19.1
hsa-miR-143-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563284
Biotype: sense_overlapping
Gene id: ENSG00000259933
Gene Name: RP11-304L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
461-481
0.027
0
RP3-416H24.1
hsa-miR-143-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546686
Biotype: antisense
Gene id: ENSG00000257671
Gene Name: RP3-416H24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
750-764
0.027
4
RP11-14P20.1
hsa-miR-143-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579492
Biotype: lincRNA
Gene id: ENSG00000264265
Gene Name: RP11-14P20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-118
0.027
3
XLOC_001050
hsa-miR-143-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001692
Biotype: transcript isomorph
Gene id: XLOC_001050
Gene Name: XLOC_001050
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-179
0.027
1
RP11-944C7.1
hsa-miR-143-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553996
Biotype: lincRNA
Gene id: ENSG00000258792
Gene Name: RP11-944C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-193
0.027
5
CLSTN2-AS1
hsa-miR-143-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_108084.1
Biotype: antisense
Gene id: NR_108084.1 (gene)
Gene Name: CLSTN2-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
91-117
0.009
7
6mer
43-57
0.009
6
6mer
36-56
0.005
3
6mer
560-583
0.003
0
6mer
1225-1236
0.001
1
XLOC_000162
hsa-miR-143-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000039
Biotype: transcript isomorph
Gene id: XLOC_000162
Gene Name: XLOC_000162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1688-1704
0.008
1
7mer
37-60
0.007
Not Conserved
6mer
1136-1159
0.006
1
6mer
1546-1559
0.005
1
XLOC_002616
hsa-miR-143-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005990
Biotype: transcript isomorph
Gene id: XLOC_002616
Gene Name: XLOC_002616
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-345
0.027
3
RP11-351M8.1
hsa-miR-143-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558261
Biotype: antisense
Gene id: ENSG00000259649
Gene Name: RP11-351M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
568-589
0.017
1
6mer
394-412
0.005
4
7mer
221-233
0.005
0
RP11-701P16.5
hsa-miR-143-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037867.1
Biotype: lincRNA
Gene id: NR_037867.1 (gene)
Gene Name: RP11-701P16.5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2784-2806
0.011
1
6mer
3092-3105
0.006
2
6mer
82-105
0.005
1
7mer
2732-2757
0.003
Not Conserved
6mer
1463-1486
0.001
0
6mer
1609-1621
0.001
0
RP11-547C5.2
hsa-miR-143-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551279
Biotype: lincRNA
Gene id: ENSG00000257373
Gene Name: RP11-547C5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
399-423
0.027
1
RP11-58O3.2
hsa-miR-143-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517308
Biotype: lincRNA
Gene id: ENSG00000254262
Gene Name: RP11-58O3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-38
0.027
0
WEE2-AS1
hsa-miR-143-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000462383
Biotype: antisense
Gene id: ENSG00000228775
Gene Name: WEE2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1240-1258
0.022
5
7mer
1056-1075
0.005
2
RP4-717I23.3
hsa-miR-143-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421202
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
709-716
0.013
3
7mer
2031-2041
0.007
3
7mer
675-686
0.004
0
6mer
2143-2170
0.003
4
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