LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-173B14.4
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000422931
Biotype: sense_intronic
Gene id: ENSG00000228444
Gene Name: RP11-173B14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-118
0.011
0
6mer
72-85
0.007
3
6mer
812-828
0.006
1
6mer
580-592
0.004
1
XLOC_010290
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
250-263
0.014
0
6mer
1019-1044
0.014
0
CTD-2527I21.7
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600959
Biotype: antisense
Gene id: ENSG00000269303
Gene Name: CTD-2527I21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-106
0.023
0
6mer
259-282
0.004
0
AC012501.2
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424322
Biotype: sense_overlapping
Gene id: ENSG00000227400
Gene Name: AC012501.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
161-177
0.027
1
RP11-10J21.3
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518520
Biotype: antisense
Gene id: ENSG00000254019
Gene Name: RP11-10J21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
541-558
0.027
1
KRT73-AS1
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552364
Biotype: antisense
Gene id: ENSG00000257495
Gene Name: KRT73-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3644-3662
0.018
1
6mer
786-808
0.005
8
6mer
275-294
0.003
1
6mer
1396-1419
0.003
6
GK-IT1
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000441146
Biotype: sense_intronic
Gene id: ENSG00000229331
Gene Name: GK-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
365-390
0.027
0
HOTTIP
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000472494
Biotype: antisense
Gene id: ENSG00000243766
Gene Name: HOTTIP
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2122-2149
0.027
1
RP5-1101C3.1
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000482375
Biotype: antisense
Gene id: ENSG00000240499
Gene Name: RP5-1101C3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
356-376
0.023
1
6mer
267-293
0.004
2
RP11-98J9.3
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525381
Biotype: lincRNA
Gene id: ENSG00000254930
Gene Name: RP11-98J9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-61
0.027
0
LINC00421
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
250-263
0.014
0
6mer
1019-1044
0.014
0
AC012594.1
hsa-miR-143-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620227
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-328
0.016
0
7mer
621-633
0.008
1
6mer
639-664
0.004
0
RP1-290I10.5
hsa-miR-143-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431401
Biotype: lincRNA
Gene id: ENSG00000231056
Gene Name: RP1-290I10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
107-127
0.027
0
RP11-54A9.1
hsa-miR-143-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553247
Biotype: lincRNA
Gene id: ENSG00000257219
Gene Name: RP11-54A9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
831-849
0.015
1
7mer
200-216
0.012
0
SNHG23
hsa-miR-143-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554369
Biotype: lincRNA
Gene id: ENSG00000225746
Gene Name: SNHG23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
455-480
0.027
2
CTA-250D10.23
hsa-miR-143-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000566575
Biotype: lincRNA
Gene id: ENSG00000260655
Gene Name: CTA-250D10.23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
990-1015
0.013
3
6mer
765-782
0.003
0
6mer
518-544
0.002
1
6mer
620-635
0.002
0
6mer
654-671
0.002
0
6mer
704-721
0.002
0
6mer
735-749
0.002
Not Conserved
BDNF-AS
hsa-miR-143-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_002832.2
Biotype: antisense
Gene id: NR_002832.2 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1054-1077
0.022
0
6mer
1676-1694
0.003
1
6mer
752-774
0.003
2
RP11-523L20.1
hsa-miR-143-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562980
Biotype: lincRNA
Gene id: ENSG00000260450
Gene Name: RP11-523L20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-140
0.027
6
DARS-AS1
hsa-miR-143-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599279
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
336-359
0.023
9
7mer
113-138
0.004
1
LINC01483
hsa-miR-143-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433856
Biotype: lincRNA
Gene id: ENSG00000227517
Gene Name: LINC01483
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-341
0.012
2
6mer
2883-2902
0.005
1
7mer
2043-2067
0.005
0
7mer
1301-1320
0.005
1
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