LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
LEPREL1-AS1
hsa-miR-143-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000412203
Biotype: antisense
Gene id: ENSG00000225764
Gene Name: LEPREL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-239
0.028
4
RP11-94H18.1
hsa-miR-143-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000507496
Biotype: lincRNA
Gene id: ENSG00000248964
Gene Name: RP11-94H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
813-820
0.028
3
XLOC_013541
hsa-miR-143-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028182
Biotype: transcript isomorph
Gene id: XLOC_013541
Gene Name: XLOC_013541
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1365-1377
0.022
1
6mer
187-204
0.006
1
DHRS4-AS1
hsa-miR-143-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555045
Biotype: antisense
Gene id: ENSG00000215256
Gene Name: DHRS4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
753-769
0.014
0
7mer
184-196
0.008
0
6mer
75-93
0.005
1
RP11-768F21.1
hsa-miR-143-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535511
Biotype: lincRNA
Gene id: ENSG00000248636
Gene Name: RP11-768F21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-308
0.021
1
6mer
183-206
0.006
3
CYP1B1-AS1
hsa-miR-143-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606849
Biotype: antisense
Gene id: ENSG00000232973
Gene Name: CYP1B1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-47
0.028
1
RP11-875O11.2
hsa-miR-143-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501897
Biotype: antisense
Gene id: ENSG00000246130
Gene Name: RP11-875O11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1971-1993
0.017
3
8mer
1760-1783
0.010
0
RP11-432J24.5
hsa-miR-143-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000455414
Biotype: lincRNA
Gene id: ENSG00000226900
Gene Name: RP11-432J24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-487
0.028
1
RP11-452H21.4
hsa-miR-143-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000513207
Biotype: lincRNA
Gene id: ENSG00000251323
Gene Name: RP11-452H21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
904-921
0.023
1
6mer
1343-1361
0.004
1
RP1-309I22.2
hsa-miR-143-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13184-13202
0.005
1
7mer
15062-15074
0.005
1
8mer
4076-4091
0.003
1
6mer
25556-25567
0.002
4
6mer
23033-23056
0.002
5
6mer
3100-3112
0.002
3
6mer
26975-27002
0.002
1
6mer
11088-11103
0.001
1
6mer
9411-9426
0.001
2
6mer
4026-4046
0.001
1
6mer
18499-18511
0.001
0
6mer
27711-27735
0.001
0
6mer
15981-15997
0.001
0
6mer
7239-7256
0.001
2
XLOC_002124
hsa-miR-143-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004284
Biotype: transcript isomorph
Gene id: XLOC_002124
Gene Name: XLOC_002124
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-259
0.023
1
6mer
406-429
0.004
1
CTD-3222D19.12
hsa-miR-143-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595909
Biotype: lincRNA
Gene id: ENSG00000269399
Gene Name: CTD-3222D19.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1535-1559
0.019
0
6mer
1710-1725
0.004
0
6mer
2000-2025
0.004
1
RP11-7I15.3
hsa-miR-143-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533697
Biotype: antisense
Gene id: ENSG00000254829
Gene Name: RP11-7I15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-478
0.018
0
6mer
466-484
0.006
3
6mer
307-333
0.003
0
RP11-705O24.1
hsa-miR-143-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520097
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-77
0.028
1
DARS-AS1
hsa-miR-143-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594735
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
479-502
0.023
9
7mer
149-174
0.004
1
TTC28-AS1
hsa-miR-143-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000425112
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
702-716
0.023
0
6mer
687-711
0.004
1
CTB-181H17.1
hsa-miR-143-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000606640
Biotype: sense_intronic
Gene id: ENSG00000272219
Gene Name: CTB-181H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1736-1760
0.025
0
6mer
329-352
0.003
0
LINC01140
hsa-miR-143-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000461990
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-149
0.017
2
7mer
162-186
0.011
1
RP11-711C17.2
hsa-miR-143-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549140
Biotype: lincRNA
Gene id: ENSG00000258332
Gene Name: RP11-711C17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
483-500
0.028
2
RP11-1018N14.2
hsa-miR-143-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000441895
Biotype: lincRNA
Gene id: ENSG00000225860
Gene Name: RP11-1018N14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-275
0.011
1
7mer
251-263
0.008
2
6mer
2533-2541
0.005
1
6mer
1589-1593
0.003
3
6mer
1599-1622
0.001
1
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