LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-143-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-793H13.8
hsa-miR-143-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547717
Biotype: retained_intron
Gene id: ENSG00000257379
Gene Name: RP11-793H13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
675-698
0.028
12
RP5-965G21.4
hsa-miR-143-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618303
Biotype: lincRNA
Gene id: ENSG00000274414
Gene Name: RP5-965G21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2087-2112
0.015
0
6mer
226-240
0.010
1
6mer
1392-1413
0.003
1
XLOC_008883
hsa-miR-143-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018986
Biotype: transcript isomorph
Gene id: XLOC_008883
Gene Name: XLOC_008883
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
734-760
0.016
1
7mer
495-514
0.012
2
LOC645513
hsa-miR-143-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037630.1
Biotype: antisense
Gene id: NR_037630.1 (gene)
Gene Name: LOC645513
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
970-989
0.015
2
7mer
885-900
0.013
1
RP5-965G21.3
hsa-miR-143-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613361
Biotype: lincRNA
Gene id: ENSG00000277938
Gene Name: RP5-965G21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-144
0.021
1
6mer
1601-1624
0.003
1
6mer
1032-1045
0.003
0
6mer
820-834
0.002
1
XLOC_006121
hsa-miR-143-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013473
Biotype: transcript isomorph
Gene id: XLOC_006121
Gene Name: XLOC_006121
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-218
0.028
0
LCMT1-AS2
hsa-miR-143-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
561-586
0.011
0
6mer
29-44
0.009
0
6mer
113-132
0.008
0
RP11-308B5.2
hsa-miR-143-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000440614
Biotype: lincRNA
Gene id: ENSG00000235813
Gene Name: RP11-308B5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
901-925
0.019
Not Conserved
7mer
131-152
0.005
0
6mer
381-404
0.004
3
RP11-85G21.3
hsa-miR-143-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607010
Biotype: lincRNA
Gene id: ENSG00000271736
Gene Name: RP11-85G21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
175-192
0.028
1
CERS6-AS1
hsa-miR-143-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000600693
Biotype: antisense
Gene id: ENSG00000227617
Gene Name: CERS6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-146
0.023
1
7mer
399-421
0.004
0
AC016644.1
hsa-miR-143-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000438553
Biotype: antisense
Gene id: ENSG00000235635
Gene Name: AC016644.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-309
0.028
9
RP11-290F5.1
hsa-miR-143-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610683
Biotype: lincRNA
Gene id: ENSG00000249096
Gene Name: RP11-290F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-550
0.024
0
6mer
544-550
0.004
0
RP5-881L22.5
hsa-miR-143-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000438702
Biotype: antisense
Gene id: ENSG00000226812
Gene Name: RP5-881L22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-67
0.028
1
RP11-432J3.4
hsa-miR-143-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000472649
Biotype: lincRNA
Gene id: ENSG00000279797
Gene Name: RP11-432J3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-417
0.024
2
6mer
189-207
0.003
0
CDKN2B-AS1
hsa-miR-143-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000580576
Biotype: antisense
Gene id: ENSG00000240498
Gene Name: CDKN2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-187
0.024
1
6mer
1621-1645
0.004
1
RP11-133F8.2
hsa-miR-143-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512210
Biotype: lincRNA
Gene id: ENSG00000249776
Gene Name: RP11-133F8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-372
0.022
1
7mer
11-34
0.006
0
XLOC_004950
hsa-miR-143-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010434
Biotype: transcript isomorph
Gene id: XLOC_004950
Gene Name: XLOC_004950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-173
0.028
1
RP11-373I8.1
hsa-miR-143-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000474598
Biotype: lincRNA
Gene id: ENSG00000244382
Gene Name: RP11-373I8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
348-356
0.025
6
6mer
414-432
0.003
0
XLOC_009248
hsa-miR-143-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019969
Biotype: transcript isomorph
Gene id: XLOC_009248
Gene Name: XLOC_009248
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-173
0.028
1
XLOC_007614
hsa-miR-143-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016231
Biotype: transcript isomorph
Gene id: XLOC_007614
Gene Name: XLOC_007614
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1878-1902
0.019
0
6mer
1996-2018
0.004
1
6mer
1711-1734
0.003
Not Conserved
6mer
934-957
0.002
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept