LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
XLOC_014420
hsa-miR-143-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029355
Biotype: transcript isomorph
Gene id: XLOC_014420
Gene Name: XLOC_014420
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1401-1424
0.010
3
8mer
992-1003
0.008
1
8mer
935-956
0.005
0
7mer
877-891
0.004
2
6mer
1081-1106
0.002
1
BACE1-AS
hsa-miR-143-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037803.1
Biotype: antisense
Gene id: NR_037803.1 (gene)
Gene Name: BACE1-AS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
620-635
0.024
1
6mer
322-338
0.004
2
ERVK13-1
hsa-miR-143-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000619862
Biotype: retained_intron
Gene id: ENSG00000260565
Gene Name: ERVK13-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4864-4871
0.028
Not Conserved
RP11-105N13.4
hsa-miR-143-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587305
Biotype: processed_transcript
Gene id: ENSG00000263715
Gene Name: RP11-105N13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-414
0.021
0
7mer
507-533
0.008
1
RP1-144F13.3
hsa-miR-143-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424418
Biotype: antisense
Gene id: ENSG00000225903
Gene Name: RP1-144F13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-176
0.022
4
6mer
268-288
0.006
1
SND1-IT1
hsa-miR-143-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000623342
Biotype: lincRNA
Gene id: ENSG00000279078
Gene Name: SND1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2005-2030
0.024
1
6mer
180-201
0.005
1
RP11-367J11.2
hsa-miR-143-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500031
Biotype: antisense
Gene id: ENSG00000245748
Gene Name: RP11-367J11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-242
0.014
1
6mer
289-308
0.007
2
6mer
208-212
0.005
0
6mer
660-677
0.002
0
LINC01140
hsa-miR-143-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000587165
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-229
0.017
2
7mer
242-266
0.011
1
RP11-242F24.1
hsa-miR-143-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432429
Biotype: lincRNA
Gene id: ENSG00000228750
Gene Name: RP11-242F24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1621-1645
0.021
0
7mer
810-830
0.003
0
6mer
965-988
0.002
0
6mer
845-864
0.001
1
6mer
887-905
0.001
0
SATB1-AS1
hsa-miR-143-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596277
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-72
0.028
4
CTC-265F19.1
hsa-miR-143-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587894
Biotype: sense_intronic
Gene id: ENSG00000267749
Gene Name: CTC-265F19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
13-36
0.017
1
6mer
714-736
0.011
1
RP11-794M8.1
hsa-miR-143-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586278
Biotype: antisense
Gene id: ENSG00000267239
Gene Name: RP11-794M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
781-806
0.021
0
6mer
196-219
0.005
1
6mer
1081-1098
0.002
0
XLOC_012630
hsa-miR-143-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026287
Biotype: transcript isomorph
Gene id: XLOC_012630
Gene Name: XLOC_012630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1601-1626
0.023
0
6mer
743-768
0.005
0
XLOC_000294
hsa-miR-143-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001027
Biotype: transcript isomorph
Gene id: XLOC_000294
Gene Name: XLOC_000294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6259-6272
0.011
2
7mer
5115-5139
0.008
0
7mer
2650-2670
0.003
1
6mer
907-919
0.002
2
6mer
417-440
0.002
0
7mer
3685-3708
0.002
0
RP1-90G24.6
hsa-miR-143-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000452181
Biotype: lincRNA
Gene id: ENSG00000224050
Gene Name: RP1-90G24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
362-384
0.015
0
6mer
265-270
0.013
0
RP11-94H18.1
hsa-miR-143-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517356
Biotype: lincRNA
Gene id: ENSG00000248964
Gene Name: RP11-94H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
813-820
0.028
3
AC007631.1
hsa-miR-143-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578545
Biotype: lincRNA
Gene id: ENSG00000264131
Gene Name: AC007631.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-70
0.028
2
AC000036.4
hsa-miR-143-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000449652
Biotype: antisense
Gene id: ENSG00000225929
Gene Name: AC000036.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1407-1430
0.010
3
8mer
998-1009
0.008
1
8mer
941-962
0.005
0
7mer
883-897
0.004
2
6mer
1087-1112
0.002
1
RP11-705O24.1
hsa-miR-143-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519452
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-248
0.028
1
KIRREL3-AS2
hsa-miR-143-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532988
Biotype: antisense
Gene id: ENSG00000254960
Gene Name: KIRREL3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-149
0.021
1
6mer
457-482
0.007
6
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