LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
MIR223
hsa-miR-143-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000621933
Biotype: antisense
Gene id: ENSG00000274536
Gene Name: MIR223
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1657-1675
0.064
0
6mer
225-240
0.004
2
6mer
1435-1451
0.004
0
7mer
507-525
0.003
Not Conserved
6mer
208-226
0.003
2
CTD-2017D11.1
hsa-miR-143-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-687
0.046
1
6mer
162-185
0.014
1
6mer
287-304
0.010
1
6mer
346-364
0.008
1
RP1-224A6.9
hsa-miR-143-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606754
Biotype: lincRNA
Gene id: ENSG00000271840
Gene Name: RP1-224A6.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
708-728
0.044
1
8mer
150-166
0.034
1
RP11-108M9.3
hsa-miR-143-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457856
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
140-159
0.061
0
6mer
396-422
0.016
1
XLOC_009414
hsa-miR-143-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019614
Biotype: transcript isomorph
Gene id: XLOC_009414
Gene Name: XLOC_009414
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
996-1022
0.053
2
7mer
1327-1344
0.011
0
7mer
87-108
0.008
1
6mer
1310-1329
0.005
1
XLOC_013814
hsa-miR-143-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028072
Biotype: transcript isomorph
Gene id: XLOC_013814
Gene Name: XLOC_013814
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
315-333
0.062
0
7mer
1339-1363
0.009
0
6mer
1507-1523
0.003
0
6mer
1163-1185
0.002
1
6mer
1382-1403
0.001
1
FLJ42102
hsa-miR-143-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_038862.1
Biotype: lincRNA
Gene id: NR_038862.1 (gene)
Gene Name: FLJ42102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7-31
0.066
0
6mer
473-496
0.003
0
6mer
437-448
0.003
1
6mer
1538-1554
0.002
1
6mer
1368-1391
0.002
0
6mer
872-898
0.002
1
CTA-796E4.5
hsa-miR-143-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5909-5931
0.010
2
6mer
31600-31622
0.005
1
7mer
20154-20173
0.005
1
6mer
31338-31362
0.005
1
7mer
11558-11574
0.004
1
7mer
12655-12668
0.003
3
6mer
818-844
0.003
3
7mer
14597-14624
0.003
0
6mer
31257-31273
0.003
1
6mer
25825-25843
0.003
5
6mer
30569-30595
0.003
2
6mer
11817-11832
0.003
1
7mer
27003-27030
0.003
Not Conserved
6mer
15709-15724
0.002
1
7mer
11585-11609
0.002
1
6mer
29774-29792
0.002
3
6mer
17237-17258
0.002
1
6mer
18119-18139
0.002
0
6mer
24770-24797
0.002
1
6mer
14102-14122
0.002
1
6mer
17630-17643
0.002
0
7mer
14610-14628
0.002
0
6mer
4897-4908
0.001
0
6mer
11148-11167
0.001
1
6mer
28113-28135
0.001
1
6mer
20570-20585
0.001
1
6mer
20452-20469
0.001
0
6mer
2543-2563
0.001
0
6mer
24520-24539
0.001
1
6mer
24410-24434
0.001
0
XLOC_013274
hsa-miR-143-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
573-598
0.033
1
9mer
5188-5204
0.031
0
6mer
271-288
0.005
0
6mer
4704-4726
0.004
1
6mer
4057-4074
0.002
0
6mer
4603-4627
0.001
Not Conserved
XLOC_008014
hsa-miR-143-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017432
Biotype: transcript isomorph
Gene id: XLOC_008014
Gene Name: XLOC_008014
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1052-1072
0.043
6
7mer
418-440
0.024
4
6mer
87-100
0.008
5
AC004448.5
hsa-miR-143-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609396
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
661-684
0.070
1
7mer
484-508
0.004
Not Conserved
RP11-834C11.11
hsa-miR-143-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000564380
Biotype: lincRNA
Gene id: ENSG00000260470
Gene Name: RP11-834C11.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-250
0.037
4
8mer
360-377
0.023
4
7mer
508-513
0.014
5
RP11-69I8.2
hsa-miR-143-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454596
Biotype: lincRNA
Gene id: ENSG00000236673
Gene Name: RP11-69I8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2048-2067
0.045
1
7mer
157-173
0.020
0
6mer
385-408
0.009
1
LA16c-361A3.3
hsa-miR-143-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569670
Biotype: antisense
Gene id: ENSG00000261207
Gene Name: LA16c-361A3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-44
0.054
2
7mer
471-491
0.020
1
SOX9-AS1
hsa-miR-143-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000533232
Biotype: retained_intron
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-232
0.049
1
8mer
1146-1163
0.021
0
6mer
665-685
0.004
2
INHBA-AS1
hsa-miR-143-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420821
Biotype: antisense
Gene id: ENSG00000224116
Gene Name: INHBA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1383-1407
0.066
0
6mer
1037-1058
0.005
2
6mer
1217-1240
0.003
1
EEF1E1-BLOC1S5
hsa-miR-143-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_037618.1
Biotype: sense
Gene id: NR_037618.1 (gene)
Gene Name: EEF1E1-BLOC1S5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
27-42
0.064
3
7mer
726-750
0.008
0
6mer
976-1003
0.001
1
RP11-222N13.1
hsa-miR-143-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530418
Biotype: lincRNA
Gene id: ENSG00000254661
Gene Name: RP11-222N13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
432-446
0.064
2
7mer
327-336
0.009
1
XLOC_012339
hsa-miR-143-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025132
Biotype: transcript isomorph
Gene id: XLOC_012339
Gene Name: XLOC_012339
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
628-652
0.068
1
6mer
1503-1527
0.003
0
6mer
1033-1048
0.002
0
XLOC_012312
hsa-miR-143-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025497
Biotype: transcript isomorph
Gene id: XLOC_012312
Gene Name: XLOC_012312
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-467
0.072
1
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