LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-706O15.1
hsa-miR-143-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000486571
Biotype: lincRNA
Gene id: ENSG00000205664
Gene Name: RP11-706O15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-313
0.019
0
6mer
10-29
0.010
1
EMX2OS
hsa-miR-143-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424371
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-78
0.029
1
TTN-AS1
hsa-miR-143-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604571
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
388-408
0.016
5
8mer
470-490
0.013
3
ARHGEF26-AS1
hsa-miR-143-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610221
Biotype: retained_intron
Gene id: ENSG00000243069
Gene Name: ARHGEF26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-208
0.029
1
LINC01017
hsa-miR-143-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508823
Biotype: lincRNA
Gene id: ENSG00000250716
Gene Name: LINC01017
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-281
0.028
0
LINC00324
hsa-miR-143-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000315707
Biotype: lincRNA
Gene id: ENSG00000178977
Gene Name: LINC00324
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
596-622
0.016
1
7mer
1277-1302
0.010
0
6mer
412-434
0.003
1
RP11-94L15.2
hsa-miR-143-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4870-4889
0.010
3
8mer
868-881
0.008
1
7mer
2461-2477
0.007
1
6mer
3070-3090
0.001
3
6mer
4175-4189
0.001
0
LINC00999
hsa-miR-143-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024497.2
Biotype: lincRNA
Gene id: NR_024497.2 (gene)
Gene Name: LINC00999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-117
0.017
1
7mer
736-758
0.008
0
7mer
1561-1579
0.002
0
6mer
918-936
0.002
Not Conserved
RP11-275I4.2
hsa-miR-143-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560203
Biotype: lincRNA
Gene id: ENSG00000259747
Gene Name: RP11-275I4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
244-270
0.028
1
LINC01140
hsa-miR-143-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000589455
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-229
0.018
2
7mer
242-266
0.011
1
RP11-538D16.3
hsa-miR-143-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428646
Biotype: lincRNA
Gene id: ENSG00000225982
Gene Name: RP11-538D16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1025-1043
0.018
3
7mer
1025-1047
0.006
0
6mer
84-97
0.004
1
RP11-513M1.1
hsa-miR-143-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579321
Biotype: antisense
Gene id: ENSG00000263952
Gene Name: RP11-513M1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-43
0.028
1
AF064858.6
hsa-miR-143-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000380931
Biotype: lincRNA
Gene id: ENSG00000205622
Gene Name: AF064858.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-23
0.013
1
7mer
2164-2179
0.006
1
6mer
261-280
0.004
0
6mer
1225-1248
0.002
2
7mer
1221-1235
0.002
1
6mer
1940-1965
0.001
1
6mer
1875-1893
0.001
0
LINC01101
hsa-miR-143-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_027181.1
Biotype: lincRNA
Gene id: NR_027181.1 (gene)
Gene Name: LINC01101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-103
0.023
3
6mer
1606-1624
0.003
1
6mer
561-584
0.003
1
RP11-494M8.4
hsa-miR-143-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527847
Biotype: sense_overlapping
Gene id: ENSG00000254951
Gene Name: RP11-494M8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-33
0.025
1
6mer
1949-1968
0.004
Not Conserved
LINC00458
hsa-miR-143-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000423442
Biotype: lincRNA
Gene id: ENSG00000234787
Gene Name: LINC00458
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-606
0.009
1
6mer
701-715
0.007
4
7mer
823-839
0.007
0
7mer
685-703
0.005
1
XLOC_009727
hsa-miR-143-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020398
Biotype: transcript isomorph
Gene id: XLOC_009727
Gene Name: XLOC_009727
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1160-1182
0.023
1
6mer
993-1016
0.005
0
CTD-3051D23.1
hsa-miR-143-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556430
Biotype: lincRNA
Gene id: ENSG00000258811
Gene Name: CTD-3051D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-202
0.017
0
6mer
2658-2680
0.007
1
6mer
2787-2810
0.003
0
6mer
1552-1573
0.002
0
AP000330.8
hsa-miR-143-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_038885.1
Biotype: lincRNA
Gene id: NR_038885.1 (gene)
Gene Name: AP000330.8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2523-2547
0.024
1
6mer
1840-1866
0.004
1
RP11-890B15.3
hsa-miR-143-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525716
Biotype: lincRNA
Gene id: ENSG00000255455
Gene Name: RP11-890B15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1088-1110
0.011
4
7mer
1428-1442
0.006
0
7mer
2211-2233
0.004
1
6mer
3371-3389
0.004
2
8mer
1423-1442
0.003
1
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