LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
LINC00539
hsa-miR-143-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000411525
Biotype: lincRNA
Gene id: ENSG00000224429
Gene Name: LINC00539
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-476
0.029
1
LPP-AS1
hsa-miR-143-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000434996
Biotype: antisense
Gene id: ENSG00000224563
Gene Name: LPP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-257
0.029
2
RP5-1057I20.2
hsa-miR-143-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550909
Biotype: lincRNA
Gene id: ENSG00000257488
Gene Name: RP5-1057I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-388
0.029
1
RP11-705O24.1
hsa-miR-143-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519766
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-69
0.029
1
RP11-290H9.4
hsa-miR-143-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576345
Biotype: antisense
Gene id: ENSG00000263293
Gene Name: RP11-290H9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-87
0.029
3
RP11-488C13.7
hsa-miR-143-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553758
Biotype: lincRNA
Gene id: ENSG00000258610
Gene Name: RP11-488C13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-383
0.029
7
RP11-110G21.1
hsa-miR-143-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520357
Biotype: antisense
Gene id: ENSG00000228801
Gene Name: RP11-110G21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
381-397
0.029
1
RP11-25L3.3
hsa-miR-143-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581541
Biotype: lincRNA
Gene id: ENSG00000263655
Gene Name: RP11-25L3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-424
0.029
1
XLOC_002727
hsa-miR-143-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006125
Biotype: transcript isomorph
Gene id: XLOC_002727
Gene Name: XLOC_002727
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2997-3011
0.009
1
7mer
2828-2839
0.009
1
7mer
1994-1999
0.005
2
6mer
670-683
0.004
2
6mer
1093-1119
0.001
0
C12orf80
hsa-miR-143-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551332
Biotype: lincRNA
Gene id: ENSG00000257137
Gene Name: C12orf80
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
520-539
0.008
1
6mer
562-581
0.007
5
6mer
243-255
0.005
3
6mer
776-791
0.004
2
6mer
202-221
0.004
2
RP11-394I13.2
hsa-miR-143-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605739
Biotype: lincRNA
Gene id: ENSG00000271151
Gene Name: RP11-394I13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1017-1024
0.029
0
RP4-715N11.2
hsa-miR-143-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000421642
Biotype: lincRNA
Gene id: ENSG00000232294
Gene Name: RP4-715N11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-309
0.029
5
CTB-179K24.3
hsa-miR-143-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586556
Biotype: antisense
Gene id: ENSG00000267348
Gene Name: CTB-179K24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-45
0.029
1
RP11-335L23.4
hsa-miR-143-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609144
Biotype: lincRNA
Gene id: ENSG00000273180
Gene Name: RP11-335L23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-192
0.029
1
RP5-1057I20.2
hsa-miR-143-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548564
Biotype: lincRNA
Gene id: ENSG00000257488
Gene Name: RP5-1057I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-362
0.029
1
HLA-F-AS1
hsa-miR-143-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434086
Biotype: processed_transcript
Gene id: ENSG00000214922
Gene Name: HLA-F-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
307-323
0.029
1
AC006115.3
hsa-miR-143-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597946
Biotype: antisense
Gene id: ENSG00000269793
Gene Name: AC006115.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
316-333
0.029
1
AC012594.1
hsa-miR-143-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000616148
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-230
0.017
0
7mer
606-618
0.008
1
6mer
624-649
0.004
0
RP11-669N7.2
hsa-miR-143-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540739
Biotype: retained_intron
Gene id: ENSG00000249196
Gene Name: RP11-669N7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-290
0.029
0
AC025171.1
hsa-miR-143-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000399543
Biotype: retained_intron
Gene id: ENSG00000215068
Gene Name: AC025171.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2113-2139
0.015
1
7mer
1822-1835
0.014
0
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