LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-379B18.5
hsa-miR-143-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000614795
Biotype: retained_intron
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
583-601
0.018
1
6mer
587-601
0.005
0
6mer
562-573
0.004
0
7mer
466-490
0.003
Not Conserved
LOC100506526
hsa-miR-143-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105000.1
Biotype: lincRNA
Gene id: NR_105000.1 (gene)
Gene Name: LOC100506526
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
745-770
0.030
0
RP13-81N3.2
hsa-miR-143-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544815
Biotype: lincRNA
Gene id: ENSG00000256888
Gene Name: RP13-81N3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-148
0.030
1
RP11-201M22.1
hsa-miR-143-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000581290
Biotype: lincRNA
Gene id: ENSG00000255332
Gene Name: RP11-201M22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-98
0.029
1
DNMBP-AS1
hsa-miR-143-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000434409
Biotype: antisense
Gene id: ENSG00000227695
Gene Name: DNMBP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1756-1780
0.020
1
6mer
1601-1619
0.005
1
6mer
1941-1957
0.005
2
CTD-2316B1.1
hsa-miR-143-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504287
Biotype: lincRNA
Gene id: ENSG00000249362
Gene Name: CTD-2316B1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-214
0.029
1
RNF144A-AS1
hsa-miR-143-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426122
Biotype: antisense
Gene id: ENSG00000228203
Gene Name: RNF144A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-134
0.029
0
RP11-862G15.1
hsa-miR-143-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553485
Biotype: lincRNA
Gene id: ENSG00000258742
Gene Name: RP11-862G15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-298
0.025
0
6mer
56-73
0.005
2
XLOC_013795
hsa-miR-143-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028704
Biotype: transcript isomorph
Gene id: XLOC_013795
Gene Name: XLOC_013795
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2674-2693
0.010
3
7mer
2292-2302
0.008
1
7mer
2360-2375
0.008
2
6mer
651-663
0.003
0
RP5-1120P11.3
hsa-miR-143-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000455005
Biotype: lincRNA
Gene id: ENSG00000231881
Gene Name: RP5-1120P11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-57
0.020
0
7mer
126-143
0.009
1
RP5-991O23.1
hsa-miR-143-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517807
Biotype: lincRNA
Gene id: ENSG00000253510
Gene Name: RP5-991O23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-481
0.026
1
6mer
2079-2103
0.002
Not Conserved
6mer
1872-1891
0.002
0
FTX
hsa-miR-143-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603672
Biotype: lincRNA
Gene id: ENSG00000230590
Gene Name: FTX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-120
0.017
0
6mer
624-639
0.005
3
6mer
591-605
0.003
4
6mer
482-493
0.002
0
6mer
368-386
0.002
0
RP11-379B18.5
hsa-miR-143-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600712
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
721-739
0.018
1
6mer
725-739
0.005
0
6mer
700-711
0.004
0
7mer
604-628
0.003
Not Conserved
RP11-85E16.1
hsa-miR-143-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608114
Biotype: lincRNA
Gene id: ENSG00000272984
Gene Name: RP11-85E16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-468
0.023
2
6mer
10-33
0.006
Not Conserved
RP4-717I23.3
hsa-miR-143-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411670
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-224
0.020
3
7mer
164-175
0.010
0
XLOC_008765
hsa-miR-143-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017944
Biotype: transcript isomorph
Gene id: XLOC_008765
Gene Name: XLOC_008765
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-424
0.020
0
6mer
65-81
0.009
0
XLOC_004212
hsa-miR-143-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008698
Biotype: transcript isomorph
Gene id: XLOC_004212
Gene Name: XLOC_004212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21-46
0.029
1
RP11-290H9.4
hsa-miR-143-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575039
Biotype: antisense
Gene id: ENSG00000263293
Gene Name: RP11-290H9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-73
0.029
3
RP11-517A5.5
hsa-miR-143-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571660
Biotype: antisense
Gene id: ENSG00000262848
Gene Name: RP11-517A5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-260
0.018
2
6mer
262-282
0.006
1
6mer
522-545
0.006
0
XLOC_009254
hsa-miR-143-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019978
Biotype: transcript isomorph
Gene id: XLOC_009254
Gene Name: XLOC_009254
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
516-538
0.023
2
6mer
421-441
0.006
5
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