LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009952
hsa-miR-143-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020653
Biotype: transcript isomorph
Gene id: XLOC_009952
Gene Name: XLOC_009952
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
943-966
0.022
1
6mer
917-931
0.005
3
6mer
756-776
0.003
Not Conserved
TUG1
hsa-miR-143-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000602393
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1254-1278
0.024
9
6mer
229-249
0.006
3
C1orf143
hsa-miR-143-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000491260
Biotype: lincRNA
Gene id: ENSG00000228208
Gene Name: C1orf143
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-304
0.030
5
XLOC_006130
hsa-miR-143-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013484
Biotype: transcript isomorph
Gene id: XLOC_006130
Gene Name: XLOC_006130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-299
0.030
0
RP11-465K1.2
hsa-miR-143-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422162
Biotype: antisense
Gene id: ENSG00000237416
Gene Name: RP11-465K1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-241
0.030
0
XLOC_000730
hsa-miR-143-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000016
Biotype: transcript isomorph
Gene id: XLOC_000730
Gene Name: XLOC_000730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5373-5393
0.024
0
6mer
636-653
0.004
1
6mer
4087-4106
0.001
1
6mer
3696-3718
0.001
0
CTA-228A9.4
hsa-miR-143-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
17804-17825
0.005
1
7mer
4835-4861
0.004
4
7mer
7206-7223
0.003
1
6mer
9842-9863
0.002
8
6mer
7433-7451
0.002
1
6mer
6502-6517
0.002
1
6mer
1427-1440
0.002
1
6mer
18421-18438
0.002
1
6mer
12404-12422
0.002
1
6mer
5384-5410
0.002
0
6mer
147-171
0.001
0
6mer
10405-10428
0.001
0
6mer
13350-13372
0.001
1
6mer
15870-15889
0.001
1
6mer
17370-17394
0.001
0
LINC00517
hsa-miR-143-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554257
Biotype: antisense
Gene id: ENSG00000259091
Gene Name: LINC00517
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3317-3337
0.023
4
7mer
861-873
0.003
1
6mer
2189-2194
0.003
1
LINC00606
hsa-miR-143-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000412578
Biotype: lincRNA
Gene id: ENSG00000226567
Gene Name: LINC00606
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1043-1051
0.024
0
7mer
2201-2225
0.006
1
RP11-415J8.3
hsa-miR-143-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457957
Biotype: antisense
Gene id: ENSG00000225313
Gene Name: RP11-415J8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-168
0.030
2
LINC00846
hsa-miR-143-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000334165
Biotype: lincRNA
Gene id: ENSG00000186842
Gene Name: LINC00846
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1018-1033
0.021
0
6mer
696-720
0.009
1
RP4-635E18.7
hsa-miR-143-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452378
Biotype: antisense
Gene id: ENSG00000226849
Gene Name: RP4-635E18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1967-1989
0.015
0
7mer
2462-2479
0.011
1
6mer
683-701
0.002
1
6mer
1259-1279
0.002
0
LINC00467
hsa-miR-143-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000534914
Biotype: lincRNA
Gene id: ENSG00000153363
Gene Name: LINC00467
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
967-986
0.030
0
RP11-525K10.3
hsa-miR-143-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563267
Biotype: antisense
Gene id: ENSG00000259867
Gene Name: RP11-525K10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-28
0.030
1
PAX8-AS1
hsa-miR-143-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11733-11756
0.008
1
7mer
10119-10134
0.008
1
7mer
6650-6675
0.005
1
6mer
10698-10723
0.002
1
6mer
729-744
0.002
0
6mer
1465-1492
0.002
3
6mer
3663-3676
0.002
1
6mer
1740-1760
0.001
0
PLS3-AS1
hsa-miR-143-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000607680
Biotype: antisense
Gene id: ENSG00000271826
Gene Name: PLS3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1308-1329
0.007
2
6mer
66-80
0.007
1
6mer
1708-1716
0.007
1
8mer+mismatch
1312-1329
0.005
1
7mer
863-878
0.003
0
RP11-862G15.1
hsa-miR-143-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556466
Biotype: lincRNA
Gene id: ENSG00000258742
Gene Name: RP11-862G15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-281
0.025
0
6mer
64-81
0.005
2
XLOC_000695
hsa-miR-143-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001384
Biotype: transcript isomorph
Gene id: XLOC_000695
Gene Name: XLOC_000695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
776-803
0.022
1
6mer
225-248
0.005
1
6mer
2802-2822
0.003
0
LINC01122
hsa-miR-143-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452840
Biotype: lincRNA
Gene id: ENSG00000233723
Gene Name: LINC01122
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3470-3494
0.015
0
7mer
150-164
0.009
3
6mer
3535-3539
0.003
1
6mer
3591-3609
0.002
0
AC007461.2
hsa-miR-143-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000419257
Biotype: lincRNA
Gene id: ENSG00000226101
Gene Name: AC007461.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
387-407
0.018
3
7mer
144-160
0.012
0
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