LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
LINC00856
hsa-miR-143-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000423770
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-249
0.030
5
XLOC_003475
hsa-miR-143-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008011
Biotype: transcript isomorph
Gene id: XLOC_003475
Gene Name: XLOC_003475
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
345-372
0.030
4
RP11-705O24.1
hsa-miR-143-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518593
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-337
0.030
1
RP13-379L11.1
hsa-miR-143-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441277
Biotype: lincRNA
Gene id: ENSG00000225708
Gene Name: RP13-379L11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
879-897
0.027
1
6mer
522-544
0.003
2
LINC01140
hsa-miR-143-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000471417
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
139-165
0.018
2
7mer
178-202
0.012
1
MALAT1
hsa-miR-143-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000618925
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-229
0.030
5
RP4-715N11.2
hsa-miR-143-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000448013
Biotype: lincRNA
Gene id: ENSG00000232294
Gene Name: RP4-715N11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-172
0.030
5
LINC00665
hsa-miR-143-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585356
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
830-855
0.030
1
RP1-313L4.3
hsa-miR-143-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451545
Biotype: antisense
Gene id: ENSG00000232194
Gene Name: RP1-313L4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
655-673
0.025
1
6mer
240-263
0.005
1
RP11-384P7.5
hsa-miR-143-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000449144
Biotype: lincRNA
Gene id: ENSG00000227301
Gene Name: RP11-384P7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-186
0.013
1
8mer
320-344
0.009
Not Conserved
7mer
894-912
0.009
Not Conserved
XLOC_002390
hsa-miR-143-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004496
Biotype: transcript isomorph
Gene id: XLOC_002390
Gene Name: XLOC_002390
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-106
0.018
1
8mer
159-179
0.012
Not Conserved
XLOC_007089
hsa-miR-143-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2438-2460
0.012
1
7mer
7793-7807
0.010
1
8mer
10528-10545
0.006
Not Conserved
6mer
6448-6467
0.002
0
RP11-344G13.1
hsa-miR-143-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_038838.1
Biotype: lincRNA
Gene id: NR_038838.1 (gene)
Gene Name: RP11-344G13.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1643-1657
0.030
1
RP11-445P17.3
hsa-miR-143-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428920
Biotype: lincRNA
Gene id: ENSG00000231039
Gene Name: RP11-445P17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
274-297
0.030
1
RP11-1437A8.4
hsa-miR-143-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563960
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2447-2465
0.013
0
6mer
965-974
0.011
0
6mer
1368-1390
0.006
0
LINC00854
hsa-miR-143-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000593624
Biotype: antisense
Gene id: ENSG00000236383
Gene Name: LINC00854
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-138
0.030
2
RP5-1057I20.2
hsa-miR-143-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546523
Biotype: lincRNA
Gene id: ENSG00000257488
Gene Name: RP5-1057I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-320
0.030
1
RP4-613B23.1
hsa-miR-143-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438017
Biotype: antisense
Gene id: ENSG00000230084
Gene Name: RP4-613B23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-95
0.027
2
6mer
55-74
0.003
Not Conserved
RP11-513M1.1
hsa-miR-143-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584321
Biotype: antisense
Gene id: ENSG00000263952
Gene Name: RP11-513M1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-43
0.030
1
RP11-344G13.1
hsa-miR-143-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505329
Biotype: lincRNA
Gene id: ENSG00000248872
Gene Name: RP11-344G13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1643-1657
0.030
1
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