LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
LINC01164
hsa-miR-143-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000341866
Biotype: lincRNA
Gene id: ENSG00000189275
Gene Name: LINC01164
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3253-3270
0.020
1
7mer
2957-2970
0.010
1
RP11-142E9.1
hsa-miR-143-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000621575
Biotype: sense_intronic
Gene id: ENSG00000276672
Gene Name: RP11-142E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1345-1364
0.011
0
7mer
1953-1967
0.007
1
8mer
2462-2477
0.006
0
6mer
33-45
0.006
1
6mer
1568-1590
0.001
Not Conserved
MAGI2-AS3
hsa-miR-143-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1469-1485
0.022
1
8mer
6100-6119
0.007
1
6mer
2917-2934
0.001
2
6mer
4147-4171
0.001
0
CTD-2555A7.1
hsa-miR-143-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562040
Biotype: lincRNA
Gene id: ENSG00000259989
Gene Name: CTD-2555A7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-82
0.018
0
7mer
63-86
0.010
1
6mer
429-444
0.002
Not Conserved
LINC01105
hsa-miR-143-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431188
Biotype: lincRNA
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-341
0.030
0
RP11-290F5.1
hsa-miR-143-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608785
Biotype: lincRNA
Gene id: ENSG00000249096
Gene Name: RP11-290F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-134
0.026
0
6mer
128-134
0.004
0
CTD-2135D7.2
hsa-miR-143-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575137
Biotype: antisense
Gene id: ENSG00000262732
Gene Name: CTD-2135D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3640-3656
0.015
1
6mer
4780-4787
0.005
1
6mer
323-339
0.004
2
6mer
4166-4176
0.003
0
6mer
3806-3823
0.002
2
6mer
3493-3515
0.001
0
6mer
2319-2343
0.001
0
XLOC_002040
hsa-miR-143-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005127
Biotype: transcript isomorph
Gene id: XLOC_002040
Gene Name: XLOC_002040
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1316-1334
0.027
5
6mer
644-662
0.003
0
LL09NC01-254D11.1
hsa-miR-143-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000564021
Biotype: antisense
Gene id: ENSG00000261018
Gene Name: LL09NC01-254D11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1595-1620
0.021
1
6mer
1625-1648
0.007
3
6mer
1201-1221
0.002
2
RP11-557H15.4
hsa-miR-143-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606039
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-407
0.019
5
8mer
191-215
0.011
0
RP11-94H6.1
hsa-miR-143-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508374
Biotype: lincRNA
Gene id: ENSG00000249441
Gene Name: RP11-94H6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
207-225
0.030
0
XLOC_006122
hsa-miR-143-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013474
Biotype: transcript isomorph
Gene id: XLOC_006122
Gene Name: XLOC_006122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
479-492
0.018
1
6mer
127-140
0.012
1
CTB-171A8.1
hsa-miR-143-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586169
Biotype: antisense
Gene id: ENSG00000266903
Gene Name: CTB-171A8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-73
0.030
2
SEPT5-GP1BB
hsa-miR-143-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037612.1
Biotype: sense
Gene id: NR_037612.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-530
0.030
10
LINC01140
hsa-miR-143-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000476432
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-308
0.018
2
7mer
321-345
0.012
1
RP11-475O6.1
hsa-miR-143-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413975
Biotype: lincRNA
Gene id: ENSG00000233008
Gene Name: RP11-475O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-186
0.025
1
6mer
44-65
0.005
0
RP11-1C8.5
hsa-miR-143-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000562917
Biotype: lincRNA
Gene id: ENSG00000261670
Gene Name: RP11-1C8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-149
0.015
4
7mer
46-59
0.012
4
6mer
2611-2622
0.001
1
6mer
1753-1777
0.001
0
6mer
2667-2676
0.001
Not Conserved
6mer
2690-2714
0.000
0
KIRREL3-AS2
hsa-miR-143-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000578084
Biotype: antisense
Gene id: ENSG00000254960
Gene Name: KIRREL3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-101
0.022
1
6mer
392-417
0.008
6
RP11-344G13.1
hsa-miR-143-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503929
Biotype: lincRNA
Gene id: ENSG00000248872
Gene Name: RP11-344G13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3456-3470
0.030
1
RP11-944C7.1
hsa-miR-143-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555560
Biotype: lincRNA
Gene id: ENSG00000258792
Gene Name: RP11-944C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-173
0.023
5
7mer
246-263
0.007
1
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