LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
AC011343.1
hsa-miR-143-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522627
Biotype: lincRNA
Gene id: ENSG00000253311
Gene Name: AC011343.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
735-756
0.013
5
7mer
5221-5236
0.011
1
7mer
4051-4065
0.007
3
RP11-147C23.1
hsa-miR-143-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451675
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
606-627
0.025
1
6mer
212-237
0.004
1
6mer
476-498
0.002
0
RP11-147C23.1
hsa-miR-143-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412513
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-465
0.025
1
6mer
50-75
0.004
1
6mer
314-336
0.002
0
XLOC_011706
hsa-miR-143-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024379
Biotype: transcript isomorph
Gene id: XLOC_011706
Gene Name: XLOC_011706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-130
0.031
6
RP11-863P13.3
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562705
Biotype: lincRNA
Gene id: ENSG00000261327
Gene Name: RP11-863P13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-167
0.019
1
7mer
521-546
0.012
1
NUTM2A-AS1
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420424
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-137
0.028
1
6mer
1225-1247
0.002
1
AC009313.1
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425470
Biotype: antisense
Gene id: ENSG00000224467
Gene Name: AC009313.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-401
0.031
1
RP11-89N17.3
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440074
Biotype: lincRNA
Gene id: ENSG00000233219
Gene Name: RP11-89N17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-124
0.021
1
7mer
318-342
0.010
2
XLOC_006686
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014576
Biotype: transcript isomorph
Gene id: XLOC_006686
Gene Name: XLOC_006686
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1700-1721
0.027
1
6mer
1622-1638
0.004
0
LOC100132354
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_024478.1
Biotype: lincRNA
Gene id: NR_024478.1 (gene)
Gene Name: LOC100132354
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-64
0.014
0
7mer
276-296
0.010
2
6mer
85-103
0.005
Not Conserved
6mer
1326-1340
0.002
0
RP11-192H23.7
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577814
Biotype: antisense
Gene id: ENSG00000264044
Gene Name: RP11-192H23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
539-560
0.012
10
6mer
406-425
0.007
11
6mer
1060-1075
0.006
4
7mer
233-257
0.005
Not Conserved
XLOC_005295
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011120
Biotype: transcript isomorph
Gene id: XLOC_005295
Gene Name: XLOC_005295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-64
0.014
0
7mer
276-296
0.010
2
6mer
85-103
0.005
Not Conserved
6mer
1326-1340
0.002
0
ZNF337-AS1
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000414393
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4065-4079
0.020
1
6mer
4464-4484
0.004
0
7mer
3208-3226
0.004
0
6mer
344-368
0.002
0
6mer
1418-1426
0.001
1
MAGI2-AS3
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000618603
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
507-525
0.031
Not Conserved
XLOC_010248
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020983
Biotype: transcript isomorph
Gene id: XLOC_010248
Gene Name: XLOC_010248
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Liver Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-86
0.019
0
7mer
286-305
0.012
1
LINC01087
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431979
Biotype: lincRNA
Gene id: ENSG00000224559
Gene Name: LINC01087
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3080-3096
0.029
0
6mer
997-1014
0.002
0
TUG1
hsa-miR-143-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000540687
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1765-1789
0.028
9
6mer
574-593
0.003
3
LINC01411
hsa-miR-143-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504512
Biotype: lincRNA
Gene id: ENSG00000249306
Gene Name: LINC01411
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-360
0.031
1
MIR7515HG
hsa-miR-143-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589024
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-289
0.031
3
RP11-37C7.3
hsa-miR-143-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564211
Biotype: antisense
Gene id: ENSG00000261136
Gene Name: RP11-37C7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1079-1098
0.012
1
7mer
1320-1339
0.007
1
6mer
2364-2368
0.005
2
7mer
1148-1158
0.004
1
6mer
1474-1500
0.002
1
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