LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-774D14.1
hsa-miR-143-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502427
Biotype: lincRNA
Gene id: ENSG00000251629
Gene Name: RP11-774D14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-222
0.029
1
6mer
251-271
0.002
1
XLOC_004211
hsa-miR-143-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008697
Biotype: transcript isomorph
Gene id: XLOC_004211
Gene Name: XLOC_004211
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-102
0.017
1
7mer
74-90
0.014
3
CTD-2024I7.13
hsa-miR-143-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502205
Biotype: antisense
Gene id: ENSG00000246422
Gene Name: CTD-2024I7.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-242
0.026
0
6mer
2029-2048
0.005
3
LOC100505658
hsa-miR-143-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038333.1
Biotype: antisense
Gene id: NR_038333.1 (gene)
Gene Name: LOC100505658
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-242
0.026
0
6mer
2029-2048
0.005
3
XLOC_014162
hsa-miR-143-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029320
Biotype: transcript isomorph
Gene id: XLOC_014162
Gene Name: XLOC_014162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1854-1868
0.008
3
7mer
3740-3761
0.006
1
7mer
3387-3405
0.006
1
7mer
3070-3091
0.003
2
6mer
221-244
0.002
0
6mer
1596-1619
0.002
3
6mer
2130-2156
0.002
8
6mer
2105-2122
0.001
1
RP11-231D20.2
hsa-miR-143-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523459
Biotype: antisense
Gene id: ENSG00000253408
Gene Name: RP11-231D20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
406-423
0.031
2
RP11-863P13.3
hsa-miR-143-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568031
Biotype: lincRNA
Gene id: ENSG00000261327
Gene Name: RP11-863P13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1272-1297
0.016
1
7mer
895-918
0.015
1
TAF1A-AS1
hsa-miR-143-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413074
Biotype: antisense
Gene id: ENSG00000225265
Gene Name: TAF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
585-605
0.031
1
XLOC_011174
hsa-miR-143-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023306
Biotype: transcript isomorph
Gene id: XLOC_011174
Gene Name: XLOC_011174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
937-958
0.026
1
6mer
721-744
0.005
1
RP11-115I9.1
hsa-miR-143-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524269
Biotype: sense_intronic
Gene id: ENSG00000253681
Gene Name: RP11-115I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-265
0.031
8
ARHGEF26-AS1
hsa-miR-143-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597231
Biotype: antisense
Gene id: ENSG00000243069
Gene Name: ARHGEF26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-244
0.031
1
XLOC_002366
hsa-miR-143-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005257
Biotype: transcript isomorph
Gene id: XLOC_002366
Gene Name: XLOC_002366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-301
0.031
0
RP11-10C24.1
hsa-miR-143-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000605513
Biotype: lincRNA
Gene id: ENSG00000271020
Gene Name: RP11-10C24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-81
0.024
0
6mer
302-323
0.007
3
SNHG23
hsa-miR-143-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556637
Biotype: lincRNA
Gene id: ENSG00000225746
Gene Name: SNHG23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
894-919
0.031
2
RP11-48G14.2
hsa-miR-143-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564401
Biotype: lincRNA
Gene id: ENSG00000259941
Gene Name: RP11-48G14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-100
0.017
2
7mer
672-688
0.014
1
RP11-515O17.2
hsa-miR-143-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574716
Biotype: antisense
Gene id: ENSG00000263096
Gene Name: RP11-515O17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-61
0.028
1
7mer
635-660
0.002
Not Conserved
RP11-586K12.10
hsa-miR-143-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570183
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-40
0.013
0
6mer
1513-1522
0.011
0
6mer
1097-1119
0.006
0
XLOC_005501
hsa-miR-143-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1844-1867
0.023
1
6mer
1453-1469
0.008
1
RP4-794I6.4
hsa-miR-143-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000621919
Biotype: lincRNA
Gene id: ENSG00000277287
Gene Name: RP4-794I6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1703-1729
0.009
2
7mer
2321-2344
0.007
0
7mer
2509-2526
0.005
Not Conserved
7mer
2658-2685
0.003
0
6mer
4597-4618
0.002
0
6mer
4776-4788
0.002
3
6mer
1996-2019
0.001
Not Conserved
6mer
3653-3666
0.001
0
6mer
3283-3307
0.000
0
C14orf64
hsa-miR-143-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000499006
Biotype: lincRNA
Gene id: ENSG00000246223
Gene Name: C14orf64
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1269-1288
0.018
1
8mer
740-755
0.011
1
6mer
266-293
0.002
0
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