LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-13A1.3
hsa-miR-143-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549278
Biotype: lincRNA
Gene id: ENSG00000257156
Gene Name: RP11-13A1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-74
0.015
2
7mer
21-34
0.013
0
6mer
523-545
0.003
0
XLOC_008993
hsa-miR-143-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018642
Biotype: transcript isomorph
Gene id: XLOC_008993
Gene Name: XLOC_008993
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-72
0.031
6
CTA-292E10.9
hsa-miR-143-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13399-13423
0.006
0
6mer
24532-24549
0.005
0
7mer
12079-12102
0.004
1
7mer
15682-15695
0.003
2
7mer
23752-23770
0.003
0
6mer
707-721
0.002
0
6mer
1546-1562
0.002
1
6mer
14158-14183
0.001
1
6mer
13231-13254
0.001
Not Conserved
7mer
23164-23188
0.001
0
6mer
20046-20064
0.001
0
6mer
22144-22168
0.001
1
6mer
13991-14018
0.001
1
6mer
19042-19057
0.001
0
6mer
14300-14319
0.001
1
6mer
17082-17106
0.000
0
CASC7
hsa-miR-143-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8878-8896
0.012
4
8mer
1621-1638
0.005
2
6mer
9312-9326
0.005
2
6mer
1194-1206
0.004
6
6mer
7592-7606
0.002
5
6mer
4180-4201
0.002
2
6mer
6830-6845
0.001
0
6mer
5097-5116
0.001
0
SOX9-AS1
hsa-miR-143-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000414600
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
638-652
0.031
0
TAPT1-AS1
hsa-miR-143-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000570786
Biotype: antisense
Gene id: ENSG00000263327
Gene Name: TAPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1628-1646
0.018
0
7mer
1821-1843
0.014
1
XLOC_012771
hsa-miR-143-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026425
Biotype: transcript isomorph
Gene id: XLOC_012771
Gene Name: XLOC_012771
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-108
0.023
2
7mer
89-108
0.009
0
RP11-231D20.2
hsa-miR-143-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518994
Biotype: antisense
Gene id: ENSG00000253408
Gene Name: RP11-231D20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
408-425
0.031
2
SH3BP5-AS1
hsa-miR-143-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436602
Biotype: antisense
Gene id: ENSG00000224660
Gene Name: SH3BP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
631-650
0.022
7
6mer
614-636
0.009
9
RP11-71H17.7
hsa-miR-143-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568966
Biotype: sense_overlapping
Gene id: ENSG00000260391
Gene Name: RP11-71H17.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2478-2495
0.028
5
6mer
1995-2008
0.003
1
RP11-29G8.3
hsa-miR-143-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000563635
Biotype: processed_transcript
Gene id: ENSG00000261553
Gene Name: RP11-29G8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2059-2077
0.017
3
6mer
567-587
0.008
11
6mer
253-274
0.006
7
6mer
664-679
0.001
2
XLOC_008200
hsa-miR-143-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017354
Biotype: transcript isomorph
Gene id: XLOC_008200
Gene Name: XLOC_008200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-606
0.021
2
7mer
997-1019
0.005
Not Conserved
6mer
836-859
0.005
1
RP11-322L20.1
hsa-miR-143-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557527
Biotype: lincRNA
Gene id: ENSG00000258804
Gene Name: RP11-322L20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1221-1237
0.029
1
6mer
458-478
0.003
1
LINC01411
hsa-miR-143-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515513
Biotype: lincRNA
Gene id: ENSG00000249306
Gene Name: LINC01411
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
575-593
0.031
1
PIK3IP1-AS1
hsa-miR-143-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000440456
Biotype: antisense
Gene id: ENSG00000228839
Gene Name: PIK3IP1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-183
0.027
3
6mer
288-305
0.004
1
XLOC_010894
hsa-miR-143-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022350
Biotype: transcript isomorph
Gene id: XLOC_010894
Gene Name: XLOC_010894
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1218-1234
0.029
1
6mer
455-475
0.003
1
LINC01312
hsa-miR-143-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456347
Biotype: lincRNA
Gene id: ENSG00000223586
Gene Name: LINC01312
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
349-371
0.027
0
6mer
695-719
0.005
1
RP1-12G14.7
hsa-miR-143-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419134
Biotype: antisense
Gene id: ENSG00000233330
Gene Name: RP1-12G14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-302
0.022
Not Conserved
7mer
49-63
0.009
0
RP11-705O24.1
hsa-miR-143-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520862
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-457
0.031
1
XLOC_011117
hsa-miR-143-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022385
Biotype: transcript isomorph
Gene id: XLOC_011117
Gene Name: XLOC_011117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5452-5471
0.016
1
8mer
740-755
0.010
1
6mer
266-293
0.002
0
6mer
4783-4794
0.002
1
6mer
2419-2437
0.001
1
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