LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
MIR6818
hsa-miR-143-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
797-821
0.012
2
7mer
7732-7757
0.007
1
8mer
46547-46569
0.005
1
7mer
4876-4895
0.005
0
7mer
44864-44882
0.005
1
7mer
16794-16802
0.005
2
7mer
24382-24394
0.004
2
7mer
32432-32452
0.003
1
7mer
19255-19266
0.003
Not Conserved
6mer
45993-46017
0.003
5
7mer
42080-42099
0.002
1
7mer
25766-25785
0.002
0
6mer
11507-11516
0.002
5
6mer
22769-22783
0.002
1
6mer
29781-29801
0.002
2
6mer
18738-18755
0.002
5
6mer
10466-10484
0.002
0
6mer
40401-40414
0.002
4
6mer
36293-36316
0.002
0
6mer
7977-7990
0.002
1
6mer
32599-32622
0.002
0
6mer
40847-40863
0.002
0
6mer
13470-13494
0.001
1
6mer
20436-20459
0.001
1
6mer
23824-23848
0.001
2
6mer
17960-17973
0.001
0
6mer
7323-7342
0.001
1
6mer
10830-10845
0.001
0
6mer
7207-7219
0.001
1
6mer
19643-19662
0.001
0
6mer
40204-40227
0.001
0
6mer
11234-11253
0.001
1
6mer
2821-2845
0.000
0
FLJ31306
hsa-miR-143-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557660
Biotype: antisense
Gene id: ENSG00000257621
Gene Name: FLJ31306
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
159-177
0.075
0
7mer
320-344
0.008
1
6mer
2155-2178
0.002
0
ZNF561-AS1
hsa-miR-143-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1837-1861
0.029
0
7mer
1707-1729
0.026
0
8mer
568-582
0.016
Not Conserved
6mer
2171-2197
0.013
0
RP11-728E14.3
hsa-miR-143-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577309
Biotype: lincRNA
Gene id: ENSG00000265043
Gene Name: RP11-728E14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3481-3495
0.054
1
6mer
3199-3217
0.012
1
6mer
847-870
0.008
1
6mer
1532-1551
0.007
1
8mer
1713-1724
0.003
Not Conserved
OIP5-AS1
hsa-miR-143-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558945
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
472-496
0.075
4
6mer
1203-1216
0.005
1
6mer
707-725
0.003
1
AC010226.4
hsa-miR-143-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515570
Biotype: antisense
Gene id: ENSG00000249249
Gene Name: AC010226.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
701-716
0.082
10
XLOC_012784
hsa-miR-143-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2163-2181
0.074
0
6mer
900-918
0.008
0
GABPB1-AS1
hsa-miR-143-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16135-16150
0.024
1
7mer
12829-12853
0.011
1
8mer
9168-9181
0.008
3
7mer
5212-5236
0.007
Not Conserved
7mer
9010-9031
0.004
1
6mer
15570-15593
0.003
1
7mer
5889-5903
0.003
1
7mer
8167-8181
0.003
1
6mer
6889-6911
0.002
1
6mer
4863-4881
0.002
0
6mer
9714-9737
0.002
1
6mer
2600-2613
0.002
3
6mer
11751-11771
0.002
1
6mer
14391-14414
0.002
1
6mer
6280-6304
0.001
1
6mer
14775-14798
0.001
Not Conserved
6mer
8338-8353
0.001
1
6mer
7338-7348
0.001
1
6mer
4596-4620
0.001
0
6mer
7413-7433
0.000
0
ZFY-AS1
hsa-miR-143-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000431145
Biotype: antisense
Gene id: ENSG00000233070
Gene Name: ZFY-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-79
0.082
0
HCG18
hsa-miR-143-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602319
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-218
0.048
1
6mer
3257-3268
0.014
4
7mer
682-707
0.009
1
6mer
362-385
0.005
0
6mer
2358-2380
0.003
1
6mer
1276-1299
0.003
2
XLOC_011952
hsa-miR-143-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024668
Biotype: transcript isomorph
Gene id: XLOC_011952
Gene Name: XLOC_011952
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
32-45
0.081
9
MESTIT1
hsa-miR-143-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_004382.1
Biotype: antisense
Gene id: NR_004382.1 (gene)
Gene Name: MESTIT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-195
0.042
0
9mer
609-633
0.037
0
6mer
2252-2268
0.002
1
MIR223
hsa-miR-143-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000618234
Biotype: antisense
Gene id: ENSG00000274536
Gene Name: MIR223
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1532-1550
0.066
0
6mer
100-115
0.005
2
6mer
1310-1326
0.004
0
7mer
382-400
0.004
Not Conserved
6mer
85-101
0.003
2
RP11-86H7.6
hsa-miR-143-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413541
Biotype: lincRNA
Gene id: ENSG00000223675
Gene Name: RP11-86H7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1777-1802
0.051
3
7mer
159-167
0.016
4
6mer
279-295
0.005
1
6mer
1555-1577
0.003
0
6mer
934-961
0.002
2
6mer
1010-1022
0.002
2
XLOC_006948
hsa-miR-143-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014880
Biotype: transcript isomorph
Gene id: XLOC_006948
Gene Name: XLOC_006948
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
24-41
0.064
2
7mer
468-484
0.012
1
6mer
91-107
0.004
1
RP11-212I21.2
hsa-miR-143-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565307
Biotype: lincRNA
Gene id: ENSG00000260135
Gene Name: RP11-212I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
229-242
0.080
9
RP11-434I12.2
hsa-miR-143-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514599
Biotype: antisense
Gene id: ENSG00000250295
Gene Name: RP11-434I12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
260-284
0.075
1
6mer
90-117
0.005
1
RP11-344E13.3
hsa-miR-143-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577537
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3519-3539
0.068
Not Conserved
8mer
909-922
0.011
Not Conserved
DLGAP1-AS2
hsa-miR-143-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000572856
Biotype: antisense
Gene id: ENSG00000262001
Gene Name: DLGAP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-49
0.049
8
7mer
2222-2248
0.028
1
6mer
1453-1466
0.002
0
XLOC_003038
hsa-miR-143-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006435
Biotype: transcript isomorph
Gene id: XLOC_003038
Gene Name: XLOC_003038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
645-665
0.079
0
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