LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
DLGAP1-AS2
hsa-miR-143-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000573177
Biotype: antisense
Gene id: ENSG00000262001
Gene Name: DLGAP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
769-787
0.032
8
RP11-1O2.1
hsa-miR-143-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584677
Biotype: lincRNA
Gene id: ENSG00000263547
Gene Name: RP11-1O2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-110
0.019
0
7mer
722-735
0.008
4
6mer
2364-2383
0.003
Not Conserved
6mer
1045-1061
0.002
0
RP11-116D17.2
hsa-miR-143-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546696
Biotype: lincRNA
Gene id: ENSG00000257519
Gene Name: RP11-116D17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
262-267
0.018
0
7mer
84-109
0.014
1
XLOC_005077
hsa-miR-143-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010550
Biotype: transcript isomorph
Gene id: XLOC_005077
Gene Name: XLOC_005077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
602-618
0.017
1
6mer
6178-6200
0.004
4
7mer
4793-4806
0.004
3
7mer
5768-5794
0.003
0
6mer
6489-6507
0.002
1
6mer
2108-2123
0.002
1
XLOC_009474
hsa-miR-143-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
367-376
0.024
0
7mer
4111-4128
0.005
3
6mer
3841-3861
0.002
3
6mer
2472-2486
0.001
1
XLOC_011639
hsa-miR-143-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024326
Biotype: transcript isomorph
Gene id: XLOC_011639
Gene Name: XLOC_011639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1120-1137
0.030
4
6mer
601-621
0.003
3
XLOC_003471
hsa-miR-143-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007487
Biotype: transcript isomorph
Gene id: XLOC_003471
Gene Name: XLOC_003471
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1253-1277
0.021
1
6mer
254-278
0.008
2
6mer
628-641
0.004
1
LCMT1-AS2
hsa-miR-143-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
960-983
0.009
1
6mer
23-38
0.007
0
6mer
107-126
0.007
0
6mer
5418-5429
0.006
0
6mer
3257-3271
0.004
0
HSD52
hsa-miR-143-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623433
Biotype: lincRNA
Gene id: ENSG00000224609
Gene Name: HSD52
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-531
0.032
3
DAOA-AS1
hsa-miR-143-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000448407
Biotype: antisense
Gene id: ENSG00000232307
Gene Name: DAOA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2315-2334
0.017
2
6mer
316-337
0.006
1
6mer
2286-2301
0.004
1
6mer
1730-1746
0.004
0
6mer
1134-1157
0.002
Not Conserved
BSN-AS1
hsa-miR-143-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000442384
Biotype: antisense
Gene id: ENSG00000235120
Gene Name: BSN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-59
0.025
1
6mer
203-221
0.004
1
6mer
150-168
0.003
1
TTN-AS1
hsa-miR-143-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585625
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
748-768
0.015
5
8mer
830-850
0.013
3
6mer
491-511
0.003
4
RP11-161H23.9
hsa-miR-143-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553259
Biotype: antisense
Gene id: ENSG00000258334
Gene Name: RP11-161H23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3173-3193
0.025
10
6mer
3436-3451
0.008
10
LINC00539
hsa-miR-143-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000434601
Biotype: lincRNA
Gene id: ENSG00000224429
Gene Name: LINC00539
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
757-772
0.029
1
6mer
404-424
0.003
1
RP11-482H16.1
hsa-miR-143-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607540
Biotype: processed_transcript
Gene id: ENSG00000271894
Gene Name: RP11-482H16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-284
0.022
Not Conserved
7mer
699-713
0.010
Not Conserved
LINC01411
hsa-miR-143-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506862
Biotype: lincRNA
Gene id: ENSG00000249306
Gene Name: LINC01411
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-199
0.032
1
RP11-451H23.3
hsa-miR-143-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513535
Biotype: lincRNA
Gene id: ENSG00000248717
Gene Name: RP11-451H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-398
0.027
0
6mer
386-409
0.005
0
RP4-715N11.2
hsa-miR-143-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000425279
Biotype: lincRNA
Gene id: ENSG00000232294
Gene Name: RP4-715N11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-172
0.032
5
AC000403.4
hsa-miR-143-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613696
Biotype: lincRNA
Gene id: ENSG00000278727
Gene Name: AC000403.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2450-2467
0.009
1
7mer
2743-2763
0.005
1
7mer
835-848
0.005
2
6mer
792-813
0.004
2
6mer
2208-2229
0.002
2
6mer
2428-2446
0.002
2
6mer
1062-1081
0.002
2
6mer
970-994
0.002
4
6mer
1669-1689
0.001
0
HCG11
hsa-miR-143-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000411553
Biotype: lincRNA
Gene id: ENSG00000228223
Gene Name: HCG11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1998-2021
0.009
1
7mer
2171-2187
0.009
Not Conserved
6mer
2945-2963
0.008
0
6mer
446-469
0.006
0
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