LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-143-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP1-102G20.5
hsa-miR-143-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452442
Biotype: antisense
Gene id: ENSG00000229531
Gene Name: RP1-102G20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-188
0.033
3
AC003984.1
hsa-miR-143-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450977
Biotype: lincRNA
Gene id: ENSG00000235139
Gene Name: AC003984.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2173-2189
0.016
0
7mer
3156-3181
0.009
1
8mer
3310-3317
0.008
1
LINC01140
hsa-miR-143-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000469312
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-254
0.016
2
8mer
565-584
0.009
0
7mer
267-291
0.008
1
RP11-282K24.3
hsa-miR-143-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-235
0.021
0
7mer
5331-5342
0.012
0
CTB-58E17.2
hsa-miR-143-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000616263
Biotype: antisense
Gene id: ENSG00000274996
Gene Name: CTB-58E17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-134
0.033
6
RP4-647C14.2
hsa-miR-143-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554614
Biotype: antisense
Gene id: ENSG00000258376
Gene Name: RP4-647C14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
361-385
0.017
0
7mer
270-295
0.008
1
8mer
2117-2135
0.006
0
6mer
296-315
0.002
1
XLOC_003200
hsa-miR-143-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006577
Biotype: transcript isomorph
Gene id: XLOC_003200
Gene Name: XLOC_003200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1414-1434
0.026
5
6mer
76-100
0.006
1
6mer
340-359
0.001
0
ADIPOQ-AS1
hsa-miR-143-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000422718
Biotype: antisense
Gene id: ENSG00000226482
Gene Name: ADIPOQ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2793-2817
0.015
1
7mer
385-399
0.009
1
6mer
1347-1366
0.004
11
7mer
1078-1103
0.004
2
RP1-35C21.2
hsa-miR-143-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438575
Biotype: lincRNA
Gene id: ENSG00000227579
Gene Name: RP1-35C21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-148
0.022
Not Conserved
6mer
168-187
0.007
3
6mer
649-675
0.004
1
RP11-18H21.1
hsa-miR-143-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509332
Biotype: lincRNA
Gene id: ENSG00000245954
Gene Name: RP11-18H21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
463-476
0.033
1
XLOC_007597
hsa-miR-143-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016207
Biotype: transcript isomorph
Gene id: XLOC_007597
Gene Name: XLOC_007597
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
699-711
0.033
1
CTD-2281E23.3
hsa-miR-143-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517950
Biotype: lincRNA
Gene id: ENSG00000254160
Gene Name: CTD-2281E23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
75-89
0.005
0
6mer
123-139
0.005
0
6mer
322-349
0.005
0
6mer
173-188
0.005
0
6mer
273-285
0.005
0
6mer
222-245
0.004
0
6mer
26-50
0.004
Not Conserved
SOX9-AS1
hsa-miR-143-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000446332
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
276-293
0.033
0
RP11-799N11.1
hsa-miR-143-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581304
Biotype: antisense
Gene id: ENSG00000272736
Gene Name: RP11-799N11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-111
0.014
0
6mer
186-204
0.011
14
7mer
177-198
0.009
6
C20orf203
hsa-miR-143-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000608990
Biotype: lincRNA
Gene id: ENSG00000198547
Gene Name: C20orf203
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-37
0.012
5
7mer
1138-1155
0.006
1
6mer
4735-4749
0.004
1
8mer
2417-2437
0.004
1
7mer
2752-2774
0.002
1
6mer
1480-1501
0.001
1
6mer
3600-3621
0.001
2
6mer
2516-2537
0.001
1
6mer
2989-3006
0.001
1
6mer
2499-2517
0.000
0
6mer
2646-2669
0.000
0
6mer
2694-2713
0.000
0
RP11-100K18.1
hsa-miR-143-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577382
Biotype: lincRNA
Gene id: ENSG00000266213
Gene Name: RP11-100K18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2569-2577
0.026
0
6mer
2223-2242
0.003
1
7mer
1215-1228
0.003
1
XLOC_012537
hsa-miR-143-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025711
Biotype: transcript isomorph
Gene id: XLOC_012537
Gene Name: XLOC_012537
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1052-1071
0.017
1
7mer
744-765
0.007
1
6mer
553-578
0.003
1
6mer
1554-1577
0.002
0
6mer
903-926
0.002
1
6mer
1033-1054
0.001
1
RP1-124C6.1
hsa-miR-143-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000421737
Biotype: lincRNA
Gene id: ENSG00000232316
Gene Name: RP1-124C6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-192
0.018
0
7mer
481-506
0.015
4
LINC01420
hsa-miR-143-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000374922
Biotype: antisense
Gene id: ENSG00000204272
Gene Name: LINC01420
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-34
0.033
5
BAIAP2-AS1
hsa-miR-143-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573167
Biotype: lincRNA
Gene id: ENSG00000226137
Gene Name: BAIAP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2026-2047
0.022
3
6mer
173-196
0.005
1
6mer
713-736
0.003
1
6mer
3660-3687
0.003
0
6mer
2632-2650
0.001
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept