LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-485G4.2
hsa-miR-143-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608374
Biotype: lincRNA
Gene id: ENSG00000272565
Gene Name: RP11-485G4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
444-468
0.019
0
7mer
2644-2671
0.005
1
6mer
4259-4264
0.005
0
6mer
3762-3775
0.003
1
6mer
2507-2524
0.001
1
XLOC_013732
hsa-miR-143-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028662
Biotype: transcript isomorph
Gene id: XLOC_013732
Gene Name: XLOC_013732
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1618-1635
0.030
1
6mer
651-678
0.002
1
6mer
723-746
0.002
0
AC025171.1
hsa-miR-143-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515108
Biotype: retained_intron
Gene id: ENSG00000215068
Gene Name: AC025171.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1817-1843
0.020
1
7mer
1526-1539
0.014
0
XLOC_012004
hsa-miR-143-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025047
Biotype: transcript isomorph
Gene id: XLOC_012004
Gene Name: XLOC_012004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2591-2608
0.015
4
7mer
1971-1986
0.015
8
6mer
775-793
0.004
6
XLOC_004988
hsa-miR-143-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010466
Biotype: transcript isomorph
Gene id: XLOC_004988
Gene Name: XLOC_004988
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-180
0.022
0
6mer
7-32
0.007
2
6mer
725-742
0.004
1
RP11-887P2.5
hsa-miR-143-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550287
Biotype: antisense
Gene id: ENSG00000258274
Gene Name: RP11-887P2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
430-436
0.031
4
6mer
610-634
0.002
0
ZNF883
hsa-miR-143-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427548
Biotype: lincRNA
Gene id: ENSG00000228623
Gene Name: ZNF883
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2080-2095
0.027
1
6mer
1976-1990
0.004
1
6mer
1144-1165
0.003
1
RP11-459E5.1
hsa-miR-143-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521141
Biotype: antisense
Gene id: ENSG00000253125
Gene Name: RP11-459E5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1588-1606
0.030
0
6mer
87-103
0.003
1
MMP24-AS1
hsa-miR-143-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000435366
Biotype: antisense
Gene id: ENSG00000126005
Gene Name: MMP24-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-211
0.018
1
8mer
182-208
0.015
1
LINC00294
hsa-miR-143-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_015451.1
Biotype: sense
Gene id: NR_015451.1 (gene)
Gene Name: LINC00294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3063-3084
0.014
2
6mer
3254-3269
0.006
2
6mer
3140-3161
0.005
4
6mer
1109-1132
0.002
1
6mer
1386-1409
0.002
6
6mer
1773-1796
0.002
1
6mer
1898-1915
0.001
Not Conserved
RP11-244G12.1
hsa-miR-143-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000614959
Biotype: lincRNA
Gene id: ENSG00000277797
Gene Name: RP11-244G12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1225-1240
0.018
3
7mer
1538-1558
0.014
3
6mer
1624-1635
0.001
1
AC026188.1
hsa-miR-143-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420000
Biotype: lincRNA
Gene id: ENSG00000223727
Gene Name: AC026188.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-496
0.031
1
6mer
422-446
0.002
0
XLOC_005278
hsa-miR-143-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011803
Biotype: transcript isomorph
Gene id: XLOC_005278
Gene Name: XLOC_005278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5950-5970
0.014
0
7mer
354-380
0.010
5
7mer
3272-3289
0.004
3
6mer
5354-5381
0.003
1
6mer
4061-4068
0.002
1
XLOC_011635
hsa-miR-143-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024321
Biotype: transcript isomorph
Gene id: XLOC_011635
Gene Name: XLOC_011635
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-465
0.030
1
6mer
436-460
0.003
1
XLOC_010719
hsa-miR-143-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022108
Biotype: transcript isomorph
Gene id: XLOC_010719
Gene Name: XLOC_010719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-70
0.015
1
7mer
382-398
0.006
1
7mer
841-860
0.006
0
6mer
49-68
0.003
0
6mer
798-822
0.002
1
6mer
1695-1708
0.001
1
CTD-2170G1.2
hsa-miR-143-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506550
Biotype: lincRNA
Gene id: ENSG00000251575
Gene Name: CTD-2170G1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
761-786
0.033
0
LINC00856
hsa-miR-143-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000434974
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-309
0.026
5
7mer
2460-2474
0.005
0
6mer
614-637
0.002
0
SSBP3-AS1
hsa-miR-143-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000361350
Biotype: antisense
Gene id: ENSG00000198711
Gene Name: SSBP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-172
0.028
1
6mer
320-338
0.005
0
XLOC_010743
hsa-miR-143-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022133
Biotype: transcript isomorph
Gene id: XLOC_010743
Gene Name: XLOC_010743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7439-7454
0.015
0
7mer
6175-6199
0.009
0
6mer
7308-7329
0.003
Not Conserved
7mer
2714-2730
0.003
1
6mer
5369-5382
0.002
0
6mer
1492-1516
0.001
0
XLOC_011217
hsa-miR-143-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023919
Biotype: transcript isomorph
Gene id: XLOC_011217
Gene Name: XLOC_011217
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
562-586
0.031
5
6mer
1261-1280
0.003
2
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