LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
PCAT19
hsa-miR-143-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595837
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
848-862
0.022
0
6mer
943-959
0.011
1
RP11-392P7.6
hsa-miR-143-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499948
Biotype: antisense
Gene id: ENSG00000247498
Gene Name: RP11-392P7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
969-992
0.016
1
7mer
631-657
0.013
3
6mer
509-513
0.005
2
RP3-340B19.3
hsa-miR-143-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000450618
Biotype: lincRNA
Gene id: ENSG00000228559
Gene Name: RP3-340B19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-340
0.027
1
6mer
406-422
0.007
1
XLOC_008363
hsa-miR-143-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017775
Biotype: transcript isomorph
Gene id: XLOC_008363
Gene Name: XLOC_008363
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
277-300
0.034
1
LINC00158
hsa-miR-143-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441013
Biotype: lincRNA
Gene id: ENSG00000185433
Gene Name: LINC00158
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
957-976
0.034
1
LINC01136
hsa-miR-143-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457348
Biotype: lincRNA
Gene id: ENSG00000233791
Gene Name: LINC01136
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-24
0.014
1
6mer
42-62
0.010
3
6mer
22-40
0.006
1
7mer
2066-2085
0.003
0
RP11-415J8.3
hsa-miR-143-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624012
Biotype: antisense
Gene id: ENSG00000225313
Gene Name: RP11-415J8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
700-714
0.034
2
LINC00158
hsa-miR-143-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000332587
Biotype: lincRNA
Gene id: ENSG00000185433
Gene Name: LINC00158
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1053-1072
0.034
1
RP11-300M24.1
hsa-miR-143-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605741
Biotype: lincRNA
Gene id: ENSG00000227455
Gene Name: RP11-300M24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1085-1111
0.027
1
7mer
786-808
0.004
0
6mer
2159-2163
0.002
1
6mer
1837-1850
0.001
0
XLOC_011248
hsa-miR-143-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023262
Biotype: transcript isomorph
Gene id: XLOC_011248
Gene Name: XLOC_011248
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1388-1401
0.012
3
7mer
387-401
0.007
1
7mer
1230-1251
0.006
1
6mer
3116-3136
0.004
1
6mer
558-573
0.003
1
6mer
1934-1957
0.002
1
AC026188.1
hsa-miR-143-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451031
Biotype: lincRNA
Gene id: ENSG00000223727
Gene Name: AC026188.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-77
0.034
6
NRG1-IT1
hsa-miR-143-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521463
Biotype: sense_intronic
Gene id: ENSG00000253974
Gene Name: NRG1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-128
0.025
0
7mer
372-396
0.009
0
VIPR1-AS1
hsa-miR-143-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600342
Biotype: antisense
Gene id: ENSG00000232354
Gene Name: VIPR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-47
0.028
1
6mer
543-567
0.003
1
6mer
138-159
0.003
1
RP4-547N15.3
hsa-miR-143-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621423
Biotype: sense_intronic
Gene id: ENSG00000275678
Gene Name: RP4-547N15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-475
0.020
0
6mer
618-641
0.004
0
6mer
1054-1079
0.004
1
6mer
2034-2057
0.003
0
6mer
2137-2160
0.003
0
AC099684.1
hsa-miR-143-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000425277
Biotype: antisense
Gene id: ENSG00000228133
Gene Name: AC099684.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-368
0.025
8
7mer
444-465
0.009
3
SSBP3-AS1
hsa-miR-143-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103541.1
Biotype: antisense
Gene id: NR_103541.1 (gene)
Gene Name: SSBP3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-169
0.029
1
6mer
317-335
0.005
0
CTD-2139B15.4
hsa-miR-143-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505158
Biotype: lincRNA
Gene id: ENSG00000250822
Gene Name: CTD-2139B15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2104-2118
0.031
1
6mer
1093-1114
0.002
1
RP11-573E11.2
hsa-miR-143-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526616
Biotype: sense_intronic
Gene id: ENSG00000254983
Gene Name: RP11-573E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-61
0.034
1
CTD-3051D23.4
hsa-miR-143-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553344
Biotype: lincRNA
Gene id: ENSG00000258593
Gene Name: CTD-3051D23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-71
0.034
0
XLOC_007321
hsa-miR-143-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015945
Biotype: transcript isomorph
Gene id: XLOC_007321
Gene Name: XLOC_007321
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
130-155
0.020
1
7mer
314-328
0.013
0
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