LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP13-16H11.5
hsa-miR-143-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000458171
Biotype: antisense
Gene id: ENSG00000235843
Gene Name: RP13-16H11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
443-468
0.029
Not Conserved
6mer
323-331
0.006
1
XLOC_011448
hsa-miR-143-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4408-4435
0.019
11
7mer
9650-9672
0.009
3
6mer
5119-5135
0.003
4
6mer
4657-4667
0.002
3
6mer
6247-6266
0.001
0
6mer
1198-1217
0.001
0
RP11-705O24.1
hsa-miR-143-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517953
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-108
0.034
1
LOC153684
hsa-miR-143-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_015447.1
Biotype: antisense
Gene id: NR_015447.1 (gene)
Gene Name: LOC153684
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2072-2098
0.020
1
7mer
1781-1794
0.015
0
RP11-598F7.4
hsa-miR-143-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508953
Biotype: antisense
Gene id: ENSG00000249695
Gene Name: RP11-598F7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4763-4769
0.033
4
6mer
2308-2325
0.001
0
TAF1A-AS1
hsa-miR-143-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427540
Biotype: antisense
Gene id: ENSG00000225265
Gene Name: TAF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
321-341
0.034
1
XLOC_003808
hsa-miR-143-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007688
Biotype: transcript isomorph
Gene id: XLOC_003808
Gene Name: XLOC_003808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4913-4937
0.009
1
7mer
2191-2215
0.006
0
7mer
2364-2383
0.006
0
6mer
8996-9012
0.005
1
6mer
4456-4481
0.002
0
6mer
2024-2045
0.002
0
6mer
3561-3580
0.001
1
6mer
7334-7354
0.001
1
6mer
5776-5783
0.001
1
6mer
4140-4164
0.001
1
PCAT19
hsa-miR-143-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597702
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-400
0.023
0
6mer
481-497
0.012
1
LINC00674
hsa-miR-143-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620266
Biotype: lincRNA
Gene id: ENSG00000278730
Gene Name: LINC00674
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2419-2442
0.034
2
AC004158.2
hsa-miR-143-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561611
Biotype: lincRNA
Gene id: ENSG00000261008
Gene Name: AC004158.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1660-1685
0.032
12
6mer
2086-2112
0.002
1
XLOC_004879
hsa-miR-143-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010376
Biotype: transcript isomorph
Gene id: XLOC_004879
Gene Name: XLOC_004879
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
953-967
0.016
1
8mer
721-740
0.011
0
6mer
526-542
0.004
2
6mer
767-779
0.003
1
RP11-739B23.1
hsa-miR-143-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000598970
Biotype: antisense
Gene id: ENSG00000268635
Gene Name: RP11-739B23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3588-3611
0.026
0
6mer
3424-3447
0.004
0
6mer
2610-2633
0.003
0
6mer
1250-1271
0.001
1
XLOC_012723
hsa-miR-143-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026371
Biotype: transcript isomorph
Gene id: XLOC_012723
Gene Name: XLOC_012723
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-31
0.018
0
7mer
643-656
0.016
4
RP11-513O17.3
hsa-miR-143-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522622
Biotype: lincRNA
Gene id: ENSG00000253614
Gene Name: RP11-513O17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2774-2798
0.024
0
7mer
2612-2635
0.010
0
RP11-69H14.6
hsa-miR-143-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557817
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-104
0.034
3
BMPR1B-AS1
hsa-miR-143-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510795
Biotype: lincRNA
Gene id: ENSG00000249599
Gene Name: BMPR1B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-99
0.026
2
6mer
13-38
0.008
2
LINC01354
hsa-miR-143-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421207
Biotype: lincRNA
Gene id: ENSG00000231768
Gene Name: LINC01354
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-569
0.018
1
8mer
510-524
0.010
0
6mer
128-141
0.006
1
LINC01024
hsa-miR-143-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522747
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
894-912
0.034
7
XLOC_001053
hsa-miR-143-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001694
Biotype: transcript isomorph
Gene id: XLOC_001053
Gene Name: XLOC_001053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-151
0.031
4
6mer
797-824
0.003
1
RNF157-AS1
hsa-miR-143-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586627
Biotype: antisense
Gene id: ENSG00000267128
Gene Name: RNF157-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
224-241
0.034
3
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