LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
TTN-AS1
hsa-miR-143-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589355
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-334
0.015
5
8mer
396-416
0.013
3
6mer
222-242
0.007
7
MIR217HG
hsa-miR-143-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446139
Biotype: lincRNA
Gene id: ENSG00000226702
Gene Name: MIR217HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-72
0.017
1
7mer
237-250
0.013
1
6mer
422-433
0.005
1
XLOC_006485
hsa-miR-143-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013855
Biotype: transcript isomorph
Gene id: XLOC_006485
Gene Name: XLOC_006485
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-129
0.024
0
7mer
1352-1377
0.011
0
AC147651.1
hsa-miR-143-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434541
Biotype: lincRNA
Gene id: ENSG00000234471
Gene Name: AC147651.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-99
0.035
3
RP11-480A16.1
hsa-miR-143-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570130
Biotype: lincRNA
Gene id: ENSG00000260261
Gene Name: RP11-480A16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
715-737
0.009
0
8mer
936-954
0.008
Not Conserved
7mer
2982-2987
0.008
Not Conserved
8mer
1857-1878
0.005
0
7mer
1226-1248
0.005
Not Conserved
XLOC_000843
hsa-miR-143-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001500
Biotype: transcript isomorph
Gene id: XLOC_000843
Gene Name: XLOC_000843
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-65
0.018
2
7mer
197-202
0.016
1
CTB-12O2.1
hsa-miR-143-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109876.1
Biotype: lincRNA
Gene id: NR_109876.1 (gene)
Gene Name: CTB-12O2.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-48
0.035
4
BSN-AS2
hsa-miR-143-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000421598
Biotype: lincRNA
Gene id: ENSG00000226913
Gene Name: BSN-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
242-258
0.019
0
8mer
2171-2192
0.013
1
6mer
159-178
0.003
1
CTC-338M12.4
hsa-miR-143-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000599439
Biotype: retained_intron
Gene id: ENSG00000233937
Gene Name: CTC-338M12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
600-626
0.035
0
SC22CB-109E1.1
hsa-miR-143-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7952-7962
0.008
1
7mer
8162-8167
0.006
1
8mer
6674-6694
0.005
0
6mer
9458-9476
0.003
1
7mer
2898-2916
0.003
1
7mer
2739-2765
0.002
0
6mer
2171-2185
0.002
2
6mer
8610-8632
0.002
1
6mer
4420-4442
0.002
1
6mer
4272-4281
0.001
0
KB-1083B1.1
hsa-miR-143-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521535
Biotype: antisense
Gene id: ENSG00000253740
Gene Name: KB-1083B1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-119
0.035
0
LINC00499
hsa-miR-143-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507145
Biotype: lincRNA
Gene id: ENSG00000251372
Gene Name: LINC00499
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
191-210
0.022
Not Conserved
7mer
179-190
0.007
0
7mer
199-214
0.006
1
CTD-2547L24.3
hsa-miR-143-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554096
Biotype: antisense
Gene id: ENSG00000258875
Gene Name: CTD-2547L24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1347-1367
0.018
3
7mer
93-118
0.012
0
7mer
758-773
0.005
1
RP11-218F4.1
hsa-miR-143-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000567574
Biotype: lincRNA
Gene id: ENSG00000260019
Gene Name: RP11-218F4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
931-947
0.021
2
7mer
570-592
0.012
2
6mer
1050-1076
0.002
0
AP001065.15
hsa-miR-143-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000449713
Biotype: lincRNA
Gene id: ENSG00000228709
Gene Name: AP001065.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
875-890
0.027
0
6mer
181-200
0.007
0
XLOC_010996
hsa-miR-143-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023093
Biotype: transcript isomorph
Gene id: XLOC_010996
Gene Name: XLOC_010996
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-541
0.016
1
7mer
6777-6799
0.015
1
6mer
4541-4552
0.002
2
6mer
4175-4191
0.002
1
XLOC_003649
hsa-miR-143-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008197
Biotype: transcript isomorph
Gene id: XLOC_003649
Gene Name: XLOC_003649
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1696-1717
0.035
2
SLC16A1-AS1
hsa-miR-143-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428411
Biotype: antisense
Gene id: ENSG00000226419
Gene Name: SLC16A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4304-4328
0.018
3
7mer
5219-5243
0.008
0
7mer
2686-2713
0.006
1
6mer
6246-6262
0.002
2
6mer
2817-2840
0.001
0
RP11-903H12.3
hsa-miR-143-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554286
Biotype: antisense
Gene id: ENSG00000258451
Gene Name: RP11-903H12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
837-857
0.021
0
6mer
84-104
0.014
9
CTA-204B4.2
hsa-miR-143-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000564464
Biotype: antisense
Gene id: ENSG00000259891
Gene Name: CTA-204B4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
564-588
0.016
0
7mer
866-890
0.012
0
6mer
1973-1997
0.004
0
6mer
730-753
0.003
0
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