LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
LINC00560
hsa-miR-143-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000564593
Biotype: lincRNA
Gene id: ENSG00000261666
Gene Name: LINC00560
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1523-1543
0.030
1
6mer
1018-1040
0.006
1
XLOC_007217
hsa-miR-143-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014535
Biotype: transcript isomorph
Gene id: XLOC_007217
Gene Name: XLOC_007217
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-536
0.026
3
7mer
2909-2924
0.009
1
6mer
1486-1503
0.001
0
RP1-313I6.12
hsa-miR-143-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605945
Biotype: antisense
Gene id: ENSG00000272009
Gene Name: RP1-313I6.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-155
0.033
0
6mer
339-358
0.003
0
AC008268.1
hsa-miR-143-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425887
Biotype: lincRNA
Gene id: ENSG00000235584
Gene Name: AC008268.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
819-834
0.015
1
7mer
735-745
0.013
1
7mer
452-473
0.007
3
XLOC_007512
hsa-miR-143-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016127
Biotype: transcript isomorph
Gene id: XLOC_007512
Gene Name: XLOC_007512
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3398-3422
0.016
0
7mer
3408-3426
0.009
1
6mer
634-641
0.005
1
6mer
3398-3417
0.004
3
6mer
1709-1734
0.002
2
RP11-501O2.4
hsa-miR-143-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460324
Biotype: lincRNA
Gene id: ENSG00000243347
Gene Name: RP11-501O2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-92
0.026
1
7mer
275-299
0.007
Not Conserved
6mer
310-330
0.003
Not Conserved
CASC11
hsa-miR-143-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000502463
Biotype: lincRNA
Gene id: ENSG00000249375
Gene Name: CASC11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-538
0.026
3
7mer
2911-2926
0.008
1
6mer
1488-1505
0.001
0
XLOC_014172
hsa-miR-143-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029529
Biotype: transcript isomorph
Gene id: XLOC_014172
Gene Name: XLOC_014172
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1913-1933
0.014
3
7mer
4284-4311
0.009
1
8mer
3284-3305
0.006
1
6mer
4394-4418
0.003
2
6mer
1550-1569
0.002
4
6mer
2728-2753
0.001
0
SRGAP2-AS1
hsa-miR-143-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450872
Biotype: antisense
Gene id: ENSG00000233501
Gene Name: SRGAP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1719-1734
0.012
0
8mer
1327-1346
0.009
0
6mer
1758-1771
0.008
4
6mer
2108-2134
0.004
1
7mer
1323-1341
0.002
0
RP11-809H16.5
hsa-miR-143-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559870
Biotype: lincRNA
Gene id: ENSG00000259222
Gene Name: RP11-809H16.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
859-884
0.033
2
6mer
449-466
0.002
1
XLOC_007475
hsa-miR-143-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016085
Biotype: transcript isomorph
Gene id: XLOC_007475
Gene Name: XLOC_007475
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1638-1652
0.035
1
RP11-138A9.2
hsa-miR-143-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608412
Biotype: lincRNA
Gene id: ENSG00000273319
Gene Name: RP11-138A9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2330-2349
0.024
1
6mer
3086-3100
0.006
1
6mer
614-625
0.004
1
6mer
1169-1181
0.002
0
RP11-844P9.2
hsa-miR-143-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508056
Biotype: lincRNA
Gene id: ENSG00000248596
Gene Name: RP11-844P9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1144-1162
0.035
1
AC068490.1
hsa-miR-143-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430520
Biotype: lincRNA
Gene id: ENSG00000228999
Gene Name: AC068490.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
463-479
0.031
1
6mer
532-554
0.004
3
RP11-907D1.2
hsa-miR-143-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557745
Biotype: lincRNA
Gene id: ENSG00000258393
Gene Name: RP11-907D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
161-186
0.029
1
7mer
505-524
0.006
1
AC073254.1
hsa-miR-143-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604677
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-244
0.026
1
6mer
428-454
0.009
1
XLOC_011100
hsa-miR-143-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022830
Biotype: transcript isomorph
Gene id: XLOC_011100
Gene Name: XLOC_011100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6431-6448
0.011
1
7mer
688-704
0.008
1
8mer
3102-3115
0.006
0
8mer
5922-5944
0.006
1
6mer
4504-4518
0.002
Not Conserved
6mer
1330-1354
0.001
0
6mer
2006-2022
0.001
1
RP11-135A24.2
hsa-miR-143-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000417447
Biotype: antisense
Gene id: ENSG00000229327
Gene Name: RP11-135A24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-228
0.031
1
6mer
158-178
0.004
0
XLOC_003730
hsa-miR-143-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008287
Biotype: transcript isomorph
Gene id: XLOC_003730
Gene Name: XLOC_003730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-376
0.035
1
LINC01442
hsa-miR-143-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618872
Biotype: lincRNA
Gene id: ENSG00000227510
Gene Name: LINC01442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-394
0.031
1
6mer
335-349
0.004
1
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