LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
CTD-2311B13.2
hsa-miR-143-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000549951
Biotype: lincRNA
Gene id: ENSG00000258265
Gene Name: CTD-2311B13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-126
0.036
1
EMX2OS
hsa-miR-143-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412075
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-100
0.027
1
6mer
604-616
0.009
4
XLOC_004671
hsa-miR-143-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010854
Biotype: transcript isomorph
Gene id: XLOC_004671
Gene Name: XLOC_004671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
540-555
0.036
0
AC025171.1
hsa-miR-143-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508913
Biotype: retained_intron
Gene id: ENSG00000215068
Gene Name: AC025171.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2123-2149
0.019
1
7mer
1832-1845
0.017
0
CTC-459F4.3
hsa-miR-143-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592404
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
383-399
0.014
0
6mer
572-592
0.012
0
6mer
400-415
0.010
0
BCYRN1
hsa-miR-143-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418539
Biotype: lincRNA
Gene id: ENSG00000236824
Gene Name: BCYRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7708-7734
0.008
1
7mer
8158-8182
0.007
1
6mer
12436-12456
0.003
1
6mer
416-436
0.002
0
6mer
8951-8978
0.002
1
6mer
10792-10810
0.002
1
6mer
2550-2571
0.002
1
6mer
6063-6078
0.002
3
6mer
9588-9604
0.002
2
6mer
3109-3130
0.001
0
6mer
5636-5657
0.001
Not Conserved
6mer
11834-11858
0.001
1
6mer
6205-6231
0.001
0
6mer
2765-2789
0.001
Not Conserved
6mer
9260-9280
0.001
0
6mer
5677-5701
0.000
1
SNHG23
hsa-miR-143-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000443252
Biotype: lincRNA
Gene id: ENSG00000225746
Gene Name: SNHG23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
430-455
0.036
2
CTC-459F4.3
hsa-miR-143-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587188
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
301-317
0.014
0
6mer
490-510
0.011
0
6mer
318-333
0.010
0
RP11-527H14.6
hsa-miR-143-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582962
Biotype: lincRNA
Gene id: ENSG00000265786
Gene Name: RP11-527H14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-349
0.036
Not Conserved
LOC102467075
hsa-miR-143-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104618.1
Biotype: lincRNA
Gene id: NR_104618.1 (gene)
Gene Name: LOC102467075
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-138
0.036
0
CTD-2165H16.4
hsa-miR-143-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000563101
Biotype: antisense
Gene id: ENSG00000261360
Gene Name: CTD-2165H16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-235
0.019
2
8mer
2220-2236
0.016
3
RP11-135L13.4
hsa-miR-143-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581122
Biotype: antisense
Gene id: ENSG00000265263
Gene Name: RP11-135L13.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1254-1277
0.031
3
6mer
604-608
0.004
2
LINC00581
hsa-miR-143-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_103790.1
Biotype: lincRNA
Gene id: NR_103790.1 (gene)
Gene Name: LINC00581
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-509
0.036
4
AC025171.1
hsa-miR-143-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000451894
Biotype: antisense
Gene id: ENSG00000215068
Gene Name: AC025171.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1034-1060
0.022
1
7mer
743-756
0.014
0
LINC00665
hsa-miR-143-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590657
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
830-847
0.029
1
7mer
1371-1395
0.005
0
7mer
1630-1640
0.002
Not Conserved
CTB-73N10.1
hsa-miR-143-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512571
Biotype: lincRNA
Gene id: ENSG00000248125
Gene Name: CTB-73N10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-330
0.017
4
7mer
199-220
0.009
3
6mer
529-546
0.005
3
6mer
267-289
0.005
1
XLOC_010009
hsa-miR-143-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020710
Biotype: transcript isomorph
Gene id: XLOC_010009
Gene Name: XLOC_010009
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-265
0.021
0
6mer
326-346
0.015
1
C1orf143
hsa-miR-143-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443836
Biotype: lincRNA
Gene id: ENSG00000228208
Gene Name: C1orf143
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-253
0.036
5
XLOC_003548
hsa-miR-143-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007386
Biotype: transcript isomorph
Gene id: XLOC_003548
Gene Name: XLOC_003548
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-99
0.013
1
7mer
211-234
0.010
5
7mer
826-839
0.008
1
6mer
260-283
0.005
3
HSD52
hsa-miR-143-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425914
Biotype: lincRNA
Gene id: ENSG00000224609
Gene Name: HSD52
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-16
0.036
3
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