LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
AC003973.4
hsa-miR-143-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-44
0.061
0
6mer
197-220
0.014
0
6mer
516-537
0.012
0
6mer
144-165
0.009
0
RP11-166B2.5
hsa-miR-143-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562802
Biotype: antisense
Gene id: ENSG00000261216
Gene Name: RP11-166B2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10-33
0.095
1
CTA-243E7.1
hsa-miR-143-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-545
0.027
1
9mer
4242-4264
0.015
0
7mer
614-638
0.014
1
7mer
11961-11985
0.009
1
7mer
8080-8096
0.008
0
8mer
863-890
0.005
0
8mer
4724-4740
0.004
0
7mer
5257-5283
0.003
1
6mer
9123-9148
0.002
4
6mer
3487-3508
0.002
1
6mer
10817-10837
0.002
0
6mer
2430-2439
0.001
1
6mer
9109-9135
0.001
0
OIP5-AS1
hsa-miR-143-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
279-303
0.083
4
6mer
514-532
0.003
1
6mer
1010-1023
0.002
1
6mer
1926-1944
0.002
3
6mer
4598-4621
0.002
0
6mer
7567-7591
0.001
1
AC006548.28
hsa-miR-143-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20201-20227
0.009
0
8mer
19392-19410
0.006
2
7mer
16974-16997
0.006
1
7mer
47262-47274
0.005
Not Conserved
7mer
1449-1466
0.004
0
9mer
52087-52103
0.003
Not Conserved
8mer
59894-59906
0.003
Not Conserved
7mer
3739-3758
0.003
0
7mer
83221-83238
0.003
0
6mer
14740-14761
0.003
7
7mer
2875-2899
0.003
1
7mer
8204-8220
0.003
1
7mer
22381-22394
0.002
2
6mer
71163-71179
0.002
0
6mer
65950-65972
0.002
0
7mer
50457-50479
0.002
Not Conserved
6mer
76552-76575
0.002
0
6mer
69989-70006
0.002
0
6mer
68258-68267
0.002
0
6mer
55210-55226
0.002
1
6mer
9867-9887
0.002
3
6mer
67883-67900
0.002
0
6mer
48723-48740
0.002
Not Conserved
6mer
59535-59547
0.002
1
6mer
31787-31800
0.002
0
6mer
10288-10313
0.001
1
6mer
18114-18127
0.001
2
6mer
6788-6814
0.001
1
6mer
36996-37019
0.001
1
6mer
68122-68136
0.001
0
6mer
80812-80824
0.001
0
6mer
72448-72465
0.001
0
6mer
79486-79505
0.001
Not Conserved
6mer
34164-34182
0.001
0
6mer
74264-74275
0.001
0
6mer
30369-30388
0.001
0
6mer
24719-24732
0.001
1
6mer
35576-35598
0.001
0
6mer
74414-74434
0.001
0
6mer
42826-42848
0.001
0
6mer
21058-21077
0.001
1
6mer
83204-83222
0.001
0
6mer
72192-72216
0.001
Not Conserved
OIP5-AS1
hsa-miR-143-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026757.1
Biotype: lincRNA
Gene id: NR_026757.1 (gene)
Gene Name: OIP5-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
281-305
0.086
4
6mer
516-534
0.003
1
6mer
1012-1025
0.003
1
RP11-407A16.7
hsa-miR-143-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545535
Biotype: lincRNA
Gene id: ENSG00000255998
Gene Name: RP11-407A16.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-310
0.077
1
7mer
30-46
0.015
0
RP11-250B2.6
hsa-miR-143-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606629
Biotype: lincRNA
Gene id: ENSG00000272129
Gene Name: RP11-250B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1425-1433
0.079
0
7mer
568-593
0.012
1
ARL2-SNX15
hsa-miR-143-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037650.1
Biotype: sense
Gene id: NR_037650.1 (gene)
Gene Name: ARL2-SNX15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
748-761
0.082
10
6mer
208-228
0.009
11
PCAT19
hsa-miR-143-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-92
0.051
1
7mer
62-88
0.029
1
8mer
1996-2010
0.007
0
6mer
2091-2107
0.004
1
RP11-212I21.2
hsa-miR-143-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569037
Biotype: lincRNA
Gene id: ENSG00000260135
Gene Name: RP11-212I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
30-43
0.090
9
RP11-525J21.1
hsa-miR-143-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511603
Biotype: lincRNA
Gene id: ENSG00000249892
Gene Name: RP11-525J21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14-37
0.084
1
6mer
580-597
0.006
3
XLOC_002967
hsa-miR-143-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006346
Biotype: transcript isomorph
Gene id: XLOC_002967
Gene Name: XLOC_002967
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
351-376
0.055
Not Conserved
7mer
31-53
0.035
4
RP5-899B16.1
hsa-miR-143-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000414038
Biotype: lincRNA
Gene id: ENSG00000231426
Gene Name: RP5-899B16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
525-532
0.084
5
6mer
216-239
0.006
2
RP5-944M2.3
hsa-miR-143-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540774
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-79
0.052
1
9mer
408-421
0.029
1
7mer
940-959
0.008
1
INHBA-AS1
hsa-miR-143-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000422822
Biotype: antisense
Gene id: ENSG00000224116
Gene Name: INHBA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2274-2298
0.072
0
6mer
1928-1949
0.007
2
6mer
498-507
0.005
0
6mer
2108-2131
0.004
1
AC015849.12
hsa-miR-143-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000605738
Biotype: lincRNA
Gene id: ENSG00000270829
Gene Name: AC015849.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
323-346
0.088
6
RP11-344E13.3
hsa-miR-143-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583962
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3144-3164
0.071
Not Conserved
8mer
534-547
0.015
Not Conserved
RP5-944M2.3
hsa-miR-143-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545767
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-200
0.055
1
9mer
529-542
0.023
1
7mer
1061-1080
0.007
1
XLOC_004901
hsa-miR-143-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010966
Biotype: transcript isomorph
Gene id: XLOC_004901
Gene Name: XLOC_004901
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1070-1094
0.080
0
6mer
850-864
0.005
1
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