LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP5-1057I20.2
hsa-miR-143-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550720
Biotype: lincRNA
Gene id: ENSG00000257488
Gene Name: RP5-1057I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-546
0.037
1
LINC00654
hsa-miR-143-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_015406.1
Biotype: lincRNA
Gene id: NR_015406.1 (gene)
Gene Name: LINC00654
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1302-1324
0.015
1
7mer
580-596
0.009
1
6mer
276-295
0.004
1
6mer
694-716
0.004
1
6mer
636-651
0.003
2
6mer
1014-1035
0.002
1
RP11-708B6.2
hsa-miR-143-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532929
Biotype: antisense
Gene id: ENSG00000255028
Gene Name: RP11-708B6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-407
0.020
0
7mer
37-42
0.017
3
LINC00898
hsa-miR-143-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000380990
Biotype: lincRNA
Gene id: ENSG00000205634
Gene Name: LINC00898
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3939-3956
0.017
1
7mer
253-280
0.016
2
6mer
794-818
0.002
1
6mer
1689-1714
0.001
0
AC002480.3
hsa-miR-143-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435127
Biotype: antisense
Gene id: ENSG00000232759
Gene Name: AC002480.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2290-2310
0.025
1
7mer
1520-1530
0.005
1
6mer
1484-1507
0.004
4
6mer
1663-1678
0.002
1
MGC45800
hsa-miR-143-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505537
Biotype: antisense
Gene id: ENSG00000177822
Gene Name: MGC45800
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-93
0.036
9
XLOC_006935
hsa-miR-143-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014866
Biotype: transcript isomorph
Gene id: XLOC_006935
Gene Name: XLOC_006935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1381-1389
0.036
0
LINC01354
hsa-miR-143-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435574
Biotype: lincRNA
Gene id: ENSG00000231768
Gene Name: LINC01354
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2594-2610
0.018
1
8mer
2551-2565
0.010
0
6mer
669-691
0.004
3
6mer
2179-2192
0.004
1
6mer
1523-1535
0.001
1
TTN-AS1
hsa-miR-143-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000578746
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-45
0.036
1
CTA-929C8.6
hsa-miR-143-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426467
Biotype: lincRNA
Gene id: ENSG00000226741
Gene Name: CTA-929C8.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4252-4276
0.034
0
6mer
4546-4562
0.002
2
RP11-329B9.1
hsa-miR-143-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000457449
Biotype: lincRNA
Gene id: ENSG00000229433
Gene Name: RP11-329B9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-358
0.016
1
7mer
1452-1468
0.009
Not Conserved
6mer
562-585
0.005
3
6mer
548-552
0.003
1
6mer
1621-1644
0.003
0
AP000472.2
hsa-miR-143-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419467
Biotype: lincRNA
Gene id: ENSG00000233215
Gene Name: AP000472.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-442
0.036
0
LINC01435
hsa-miR-143-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000607995
Biotype: lincRNA
Gene id: ENSG00000229981
Gene Name: LINC01435
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
851-874
0.036
1
LINC00339
hsa-miR-143-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434233
Biotype: lincRNA
Gene id: ENSG00000218510
Gene Name: LINC00339
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-89
0.030
0
6mer
479-497
0.006
5
XLOC_013744
hsa-miR-143-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028390
Biotype: transcript isomorph
Gene id: XLOC_013744
Gene Name: XLOC_013744
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-365
0.020
2
7mer
363-382
0.008
1
6mer
804-830
0.005
1
6mer
568-584
0.003
1
XLOC_004924
hsa-miR-143-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5520-5544
0.008
1
7mer
657-677
0.007
2
7mer
2165-2187
0.007
1
7mer
4878-4901
0.007
Not Conserved
7mer
10323-10349
0.004
0
6mer
2330-2353
0.002
1
6mer
6205-6228
0.002
0
6mer
6408-6422
0.001
0
TTN-AS1
hsa-miR-143-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589391
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-162
0.015
5
8mer
224-244
0.011
3
6mer
753-769
0.010
8
TTN-AS1
hsa-miR-143-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588244
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-162
0.015
5
8mer
224-244
0.011
3
6mer
711-727
0.010
8
C5orf64
hsa-miR-143-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507461
Biotype: lincRNA
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
476-496
0.025
5
8mer
233-255
0.011
0
RP11-370A5.2
hsa-miR-143-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609775
Biotype: sense_intronic
Gene id: ENSG00000273232
Gene Name: RP11-370A5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-397
0.036
3
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