LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-1024P17.1
hsa-miR-143-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000561507
Biotype: sense_overlapping
Gene id: ENSG00000261468
Gene Name: RP11-1024P17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1312-1336
0.034
0
6mer
1412-1427
0.003
1
XLOC_005458
hsa-miR-143-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011946
Biotype: transcript isomorph
Gene id: XLOC_005458
Gene Name: XLOC_005458
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-216
0.020
0
7mer
1619-1631
0.018
6
RP11-211N8.2
hsa-miR-143-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450704
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-123
0.037
1
RP11-774O3.3
hsa-miR-143-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505448
Biotype: lincRNA
Gene id: ENSG00000251615
Gene Name: RP11-774O3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-509
0.037
1
XLOC_009990
hsa-miR-143-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020685
Biotype: transcript isomorph
Gene id: XLOC_009990
Gene Name: XLOC_009990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-84
0.032
1
6mer
917-933
0.005
1
RP11-462P6.1
hsa-miR-143-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558948
Biotype: lincRNA
Gene id: ENSG00000259447
Gene Name: RP11-462P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-364
0.037
1
GS1-124K5.11
hsa-miR-143-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449307
Biotype: lincRNA
Gene id: ENSG00000229180
Gene Name: GS1-124K5.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-286
0.012
1
7mer
1547-1573
0.005
1
7mer
6092-6105
0.003
0
6mer
6542-6563
0.003
0
6mer
6270-6279
0.003
1
6mer
1001-1021
0.002
0
6mer
1818-1830
0.002
0
7mer
3909-3930
0.002
0
6mer
6159-6176
0.002
0
6mer
4984-4996
0.002
0
6mer
3658-3683
0.001
0
6mer
3548-3569
0.001
0
RP11-436K8.1
hsa-miR-143-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423403
Biotype: lincRNA
Gene id: ENSG00000231252
Gene Name: RP11-436K8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-213
0.034
1
6mer
797-824
0.004
5
LINC01505
hsa-miR-143-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444985
Biotype: lincRNA
Gene id: ENSG00000234229
Gene Name: LINC01505
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1644-1660
0.019
1
8mer
1247-1269
0.018
0
RP11-284F21.8
hsa-miR-143-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564032
Biotype: lincRNA
Gene id: ENSG00000260460
Gene Name: RP11-284F21.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1775-1799
0.023
1
7mer
1141-1160
0.010
2
6mer
733-740
0.004
2
Z83844.1
hsa-miR-143-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000456099
Biotype: antisense
Gene id: ENSG00000233360
Gene Name: Z83844.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1125-1150
0.023
6
8mer
951-967
0.006
1
7mer
1075-1088
0.005
8
6mer
1880-1894
0.003
2
AC004231.2
hsa-miR-143-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000418393
Biotype: antisense
Gene id: ENSG00000234477
Gene Name: AC004231.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
726-750
0.034
1
6mer
441-465
0.003
0
MEOX2-AS1
hsa-miR-143-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000442176
Biotype: lincRNA
Gene id: ENSG00000229108
Gene Name: MEOX2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
474-499
0.030
4
6mer
191-207
0.007
6
RP11-266K4.9
hsa-miR-143-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000399866
Biotype: lincRNA
Gene id: ENSG00000215241
Gene Name: RP11-266K4.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-53
0.037
1
FAM66C
hsa-miR-143-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541558
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1886-1903
0.021
0
6mer
1933-1949
0.016
1
RP11-134N1.2
hsa-miR-143-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538329
Biotype: lincRNA
Gene id: ENSG00000256084
Gene Name: RP11-134N1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-169
0.021
Not Conserved
8mer+wobble
79-99
0.017
0
ZNF337-AS1
hsa-miR-143-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000439498
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
889-903
0.037
1
AC107081.5
hsa-miR-143-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425779
Biotype: antisense
Gene id: ENSG00000236498
Gene Name: AC107081.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
465-480
0.037
0
XLOC_001963
hsa-miR-143-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004113
Biotype: transcript isomorph
Gene id: XLOC_001963
Gene Name: XLOC_001963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
859-883
0.020
3
8mer
235-259
0.015
0
6mer
1451-1467
0.003
0
RP11-778H2.1
hsa-miR-143-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539583
Biotype: lincRNA
Gene id: ENSG00000256120
Gene Name: RP11-778H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-356
0.037
2
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