LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-735B13.2
hsa-miR-143-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488348
Biotype: lincRNA
Gene id: ENSG00000242339
Gene Name: RP11-735B13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
132-150
0.038
1
CTD-2340E1.2
hsa-miR-143-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501405
Biotype: lincRNA
Gene id: ENSG00000247402
Gene Name: CTD-2340E1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
360-385
0.034
1
6mer
206-219
0.004
0
CTD-2609K8.3
hsa-miR-143-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531268
Biotype: sense_intronic
Gene id: ENSG00000255165
Gene Name: CTD-2609K8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-57
0.034
3
6mer
87-111
0.002
1
6mer
263-287
0.002
1
RP11-211N8.2
hsa-miR-143-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000446626
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-96
0.038
1
RP11-400K9.4
hsa-miR-143-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000426023
Biotype: lincRNA
Gene id: ENSG00000237807
Gene Name: RP11-400K9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
276-290
0.029
0
7mer
1314-1326
0.009
1
XLOC_013697
hsa-miR-143-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028348
Biotype: transcript isomorph
Gene id: XLOC_013697
Gene Name: XLOC_013697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3963-3983
0.025
0
6mer
4189-4216
0.004
0
6mer
771-791
0.004
1
6mer
3325-3348
0.002
Not Conserved
6mer
2282-2296
0.002
1
6mer
2197-2214
0.001
1
RP11-638L3.3
hsa-miR-143-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580659
Biotype: lincRNA
Gene id: ENSG00000265555
Gene Name: RP11-638L3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1716-1741
0.033
0
6mer
195-216
0.005
0
RP11-2N5.2
hsa-miR-143-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513366
Biotype: lincRNA
Gene id: ENSG00000249551
Gene Name: RP11-2N5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
489-508
0.038
8
RP11-69H14.6
hsa-miR-143-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558312
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-104
0.038
3
AC159540.2
hsa-miR-143-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000619740
Biotype: lincRNA
Gene id: ENSG00000278766
Gene Name: AC159540.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-117
0.026
1
6mer
83-98
0.008
1
6mer
309-327
0.004
1
XLOC_007290
hsa-miR-143-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015925
Biotype: transcript isomorph
Gene id: XLOC_007290
Gene Name: XLOC_007290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1473-1489
0.038
1
RP11-322J23.1
hsa-miR-143-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515840
Biotype: lincRNA
Gene id: ENSG00000250968
Gene Name: RP11-322J23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-478
0.038
1
RP5-839B4.8
hsa-miR-143-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449270
Biotype: lincRNA
Gene id: ENSG00000243961
Gene Name: RP5-839B4.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-141
0.029
1
6mer
67-79
0.009
7
LINC01146
hsa-miR-143-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557355
Biotype: lincRNA
Gene id: ENSG00000258867
Gene Name: LINC01146
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-323
0.038
0
USP2-AS1
hsa-miR-143-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000578923
Biotype: antisense
Gene id: ENSG00000245248
Gene Name: USP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
491-515
0.035
1
6mer
405-418
0.002
0
ADAMTS9-AS2
hsa-miR-143-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481312
Biotype: antisense
Gene id: ENSG00000241684
Gene Name: ADAMTS9-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1793-1800
0.027
0
7mer
1799-1814
0.007
0
6mer
646-671
0.004
3
SOX9-AS1
hsa-miR-143-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000533179
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
342-359
0.038
0
RP11-128P17.2
hsa-miR-143-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592198
Biotype: lincRNA
Gene id: ENSG00000267051
Gene Name: RP11-128P17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
490-515
0.038
1
RP11-111F5.4
hsa-miR-143-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430302
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
672-688
0.038
0
ZNRD1-AS1
hsa-miR-143-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5365-5380
0.011
1
8mer
1003-1015
0.011
0
7mer
5568-5590
0.010
1
8mer
5713-5730
0.005
Not Conserved
6mer
5439-5450
0.001
0
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