LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009483
hsa-miR-143-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019682
Biotype: transcript isomorph
Gene id: XLOC_009483
Gene Name: XLOC_009483
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3667-3690
0.025
1
6mer
3672-3699
0.005
1
6mer
3216-3231
0.004
1
7mer
3162-3179
0.003
1
7mer
2276-2284
0.002
0
6mer
1188-1208
0.001
0
RP5-836N17.4
hsa-miR-143-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000611964
Biotype: sense_intronic
Gene id: ENSG00000275576
Gene Name: RP5-836N17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-51
0.040
0
HSD52
hsa-miR-143-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000625069
Biotype: lincRNA
Gene id: ENSG00000224609
Gene Name: HSD52
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
843-861
0.040
3
NR2F1-AS1
hsa-miR-143-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607195
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
229-246
0.035
2
6mer
377-391
0.005
1
AC016683.5
hsa-miR-143-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446590
Biotype: antisense
Gene id: ENSG00000234174
Gene Name: AC016683.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-35
0.024
1
7mer
17-43
0.016
1
XLOC_007231
hsa-miR-143-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015178
Biotype: transcript isomorph
Gene id: XLOC_007231
Gene Name: XLOC_007231
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
316-331
0.022
1
7mer
342-355
0.018
2
RP11-167H9.3
hsa-miR-143-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000464673
Biotype: lincRNA
Gene id: ENSG00000243321
Gene Name: RP11-167H9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1757-1781
0.018
2
7mer
1750-1773
0.012
2
6mer
1884-1909
0.005
0
6mer
1679-1690
0.005
4
XLOC_008707
hsa-miR-143-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017727
Biotype: transcript isomorph
Gene id: XLOC_008707
Gene Name: XLOC_008707
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
265-286
0.019
1
7mer
203-219
0.008
1
6mer
52-69
0.007
1
6mer
1819-1839
0.006
1
LINC01024
hsa-miR-143-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499203
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2442-2460
0.031
7
7mer
807-827
0.009
1
LINC01146
hsa-miR-143-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556684
Biotype: lincRNA
Gene id: ENSG00000258867
Gene Name: LINC01146
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-218
0.040
0
LOC100129917
hsa-miR-143-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036511.1
Biotype: lincRNA
Gene id: NR_036511.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-80
0.040
0
RP11-440L14.1
hsa-miR-143-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503185
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-80
0.040
0
LOC100129917
hsa-miR-143-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036512.1
Biotype: lincRNA
Gene id: NR_036512.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-80
0.040
0
ATP13A4-AS1
hsa-miR-143-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000426459
Biotype: antisense
Gene id: ENSG00000225473
Gene Name: ATP13A4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
609-628
0.040
9
RP11-69H14.6
hsa-miR-143-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559392
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-133
0.040
3
XLOC_008642
hsa-miR-143-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017881
Biotype: transcript isomorph
Gene id: XLOC_008642
Gene Name: XLOC_008642
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
642-664
0.018
3
7mer
990-1009
0.014
1
6mer
198-209
0.007
4
RP11-24F11.2
hsa-miR-143-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451485
Biotype: antisense
Gene id: ENSG00000223552
Gene Name: RP11-24F11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-88
0.014
0
7mer
282-298
0.010
0
7mer
116-130
0.009
2
7mer
181-204
0.007
0
XLOC_005337
hsa-miR-143-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011850
Biotype: transcript isomorph
Gene id: XLOC_005337
Gene Name: XLOC_005337
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-257
0.040
1
RP11-87E22.2
hsa-miR-143-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000511897
Biotype: antisense
Gene id: ENSG00000248738
Gene Name: RP11-87E22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1509-1531
0.015
2
7mer
3591-3613
0.012
1
7mer
3282-3301
0.006
1
6mer
3488-3506
0.003
0
6mer
3513-3527
0.002
0
6mer
1928-1950
0.001
Not Conserved
RP11-111F5.4
hsa-miR-143-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429818
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1427-1443
0.040
0
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