LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009116
hsa-miR-143-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019284
Biotype: transcript isomorph
Gene id: XLOC_009116
Gene Name: XLOC_009116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-149
0.041
2
RP11-599B13.3
hsa-miR-143-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577807
Biotype: lincRNA
Gene id: ENSG00000263427
Gene Name: RP11-599B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-478
0.041
1
LINC00891
hsa-miR-143-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_034005.1
Biotype: lincRNA
Gene id: NR_034005.1 (gene)
Gene Name: LINC00891
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
952-962
0.041
1
RP11-809F4.3
hsa-miR-143-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1589-1601
0.031
1
6mer
1536-1551
0.007
1
6mer
931-940
0.003
0
RP11-805I24.1
hsa-miR-143-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563931
Biotype: lincRNA
Gene id: ENSG00000261177
Gene Name: RP11-805I24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-487
0.016
Not Conserved
7mer
7139-7159
0.008
1
7mer
158-184
0.006
0
6mer
6932-6939
0.004
1
8mer
2426-2445
0.003
1
7mer
3763-3785
0.002
Not Conserved
6mer
3391-3396
0.001
0
RP11-553A21.3
hsa-miR-143-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000428865
Biotype: antisense
Gene id: ENSG00000231652
Gene Name: RP11-553A21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
324-333
0.036
2
6mer
172-190
0.005
1
LINC01105
hsa-miR-143-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456327
Biotype: lincRNA
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1234-1248
0.035
0
7mer
709-734
0.006
1
TAF1A-AS1
hsa-miR-143-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441835
Biotype: antisense
Gene id: ENSG00000225265
Gene Name: TAF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
277-297
0.041
1
TTN-AS1
hsa-miR-143-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000614124
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-305
0.016
5
8mer
367-387
0.013
3
8mer
121-145
0.012
2
LOC100132741
hsa-miR-143-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_034004.1
Biotype: lincRNA
Gene id: NR_034004.1 (gene)
Gene Name: LOC100132741
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-113
0.041
1
RGMB-AS1
hsa-miR-143-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515003
Biotype: antisense
Gene id: ENSG00000246763
Gene Name: RGMB-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-134
0.041
2
BDNF-AS
hsa-miR-143-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530686
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
691-714
0.041
0
FZD10-AS1
hsa-miR-143-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000505807
Biotype: lincRNA
Gene id: ENSG00000250208
Gene Name: FZD10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4389-4409
0.020
1
7mer
3134-3159
0.008
0
8mer
8193-8213
0.004
1
7mer
5703-5726
0.004
1
6mer
7416-7434
0.002
1
6mer
4123-4143
0.002
1
6mer
5071-5095
0.001
1
AC022819.3
hsa-miR-143-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563495
Biotype: sense_intronic
Gene id: ENSG00000259921
Gene Name: AC022819.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3465-3479
0.013
1
7mer
3266-3280
0.011
1
8mer
2301-2325
0.006
1
7mer
2656-2679
0.004
2
6mer
2808-2812
0.003
2
6mer
1221-1241
0.002
0
6mer
1180-1194
0.001
1
XLOC_009367
hsa-miR-143-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019117
Biotype: transcript isomorph
Gene id: XLOC_009367
Gene Name: XLOC_009367
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1555-1572
0.027
2
7mer
1056-1070
0.013
1
CASC23
hsa-miR-143-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534076
Biotype: antisense
Gene id: ENSG00000255420
Gene Name: CASC23
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1525-1542
0.027
2
7mer
1026-1040
0.013
1
XLOC_009765
hsa-miR-143-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020437
Biotype: transcript isomorph
Gene id: XLOC_009765
Gene Name: XLOC_009765
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
345-369
0.023
1
7mer
735-762
0.009
1
6mer
1966-1986
0.005
1
6mer
177-200
0.005
0
XLOC_001956
hsa-miR-143-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005063
Biotype: transcript isomorph
Gene id: XLOC_001956
Gene Name: XLOC_001956
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
993-1019
0.025
9
7mer
944-954
0.007
6
6mer
100-120
0.004
2
6mer
379-390
0.003
1
6mer
2332-2347
0.002
1
CTC-277H1.7
hsa-miR-143-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573063
Biotype: retained_intron
Gene id: ENSG00000262691
Gene Name: CTC-277H1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-414
0.040
1
RP4-639J15.3
hsa-miR-143-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000594086
Biotype: lincRNA
Gene id: ENSG00000269446
Gene Name: RP4-639J15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
790-806
0.040
1
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