LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
MIR7515HG
hsa-miR-143-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591018
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-109
0.032
3
7mer
628-643
0.010
1
RP11-91K8.5
hsa-miR-143-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608823
Biotype: lincRNA
Gene id: ENSG00000272832
Gene Name: RP11-91K8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
50-71
0.042
0
AC104655.3
hsa-miR-143-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438148
Biotype: lincRNA
Gene id: ENSG00000226508
Gene Name: AC104655.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-193
0.027
5
7mer
203-229
0.014
0
XLOC_000832
hsa-miR-143-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001492
Biotype: transcript isomorph
Gene id: XLOC_000832
Gene Name: XLOC_000832
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
877-889
0.041
4
HNF4A-AS1
hsa-miR-143-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000609152
Biotype: antisense
Gene id: ENSG00000229005
Gene Name: HNF4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-89
0.024
1
7mer
63-86
0.017
4
XLOC_003704
hsa-miR-143-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008261
Biotype: transcript isomorph
Gene id: XLOC_003704
Gene Name: XLOC_003704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-51
0.028
1
7mer
1679-1704
0.009
1
6mer
1900-1919
0.005
1
RP11-69H14.6
hsa-miR-143-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558798
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-104
0.041
3
XLOC_008645
hsa-miR-143-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018842
Biotype: transcript isomorph
Gene id: XLOC_008645
Gene Name: XLOC_008645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-260
0.041
4
AP003774.6
hsa-miR-143-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000457725
Biotype: lincRNA
Gene id: ENSG00000231680
Gene Name: AP003774.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
786-812
0.027
1
6mer
45-69
0.012
1
6mer
608-631
0.003
Not Conserved
TTN-AS1
hsa-miR-143-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431259
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
628-648
0.013
5
8mer
469-488
0.012
2
8mer
710-730
0.011
3
6mer
277-301
0.005
4
MIR10A
hsa-miR-143-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000548801
Biotype: sense_intronic
Gene id: ENSG00000257178
Gene Name: MIR10A
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
576-593
0.032
6
6mer
7-30
0.005
0
7mer
2238-2254
0.005
Not Conserved
RP11-44F14.8
hsa-miR-143-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571340
Biotype: lincRNA
Gene id: ENSG00000262714
Gene Name: RP11-44F14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
978-1000
0.028
0
6mer
1630-1652
0.010
1
6mer
2115-2138
0.003
Not Conserved
RP11-1018N14.5
hsa-miR-143-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588341
Biotype: lincRNA
Gene id: ENSG00000267452
Gene Name: RP11-1018N14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2523-2547
0.020
1
8mer
1786-1809
0.017
1
6mer
2523-2542
0.005
1
RGS5
hsa-miR-143-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000526176
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-356
0.039
1
6mer
532-554
0.002
Not Conserved
XLOC_005392
hsa-miR-143-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011181
Biotype: transcript isomorph
Gene id: XLOC_005392
Gene Name: XLOC_005392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5688-5704
0.018
0
7mer
8862-8882
0.010
1
6mer
279-295
0.005
1
7mer
4255-4276
0.003
0
6mer
2423-2438
0.003
4
6mer
3296-3316
0.002
1
6mer
1394-1415
0.001
0
XLOC_004584
hsa-miR-143-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010118
Biotype: transcript isomorph
Gene id: XLOC_004584
Gene Name: XLOC_004584
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3814-3838
0.033
Not Conserved
7mer
1864-1891
0.006
1
6mer
1715-1738
0.002
1
XLOC_006027
hsa-miR-143-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013397
Biotype: transcript isomorph
Gene id: XLOC_006027
Gene Name: XLOC_006027
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-245
0.041
1
PCAT19
hsa-miR-143-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598215
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-150
0.030
0
6mer
231-247
0.011
1
RP11-849F2.5
hsa-miR-143-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580537
Biotype: antisense
Gene id: ENSG00000265749
Gene Name: RP11-849F2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
439-465
0.037
1
6mer
439-453
0.004
2
RP4-671O14.7
hsa-miR-143-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9676-9700
0.007
0
7mer
438-450
0.006
Not Conserved
7mer
14188-14212
0.006
0
7mer
6787-6802
0.005
0
7mer
4613-4626
0.004
2
7mer
10354-10374
0.003
1
6mer
7432-7448
0.002
0
6mer
8493-8517
0.002
0
6mer
5647-5663
0.002
Not Conserved
6mer
14657-14675
0.001
0
6mer
8069-8096
0.001
0
6mer
10175-10199
0.001
0
6mer
7310-7331
0.000
0
6mer
6656-6680
0.000
Not Conserved
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