LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
CTD-2306M5.1
hsa-miR-143-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507887
Biotype: lincRNA
Gene id: ENSG00000248605
Gene Name: CTD-2306M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-157
0.024
1
7mer
54-69
0.018
1
RP3-325F22.3
hsa-miR-143-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000432477
Biotype: antisense
Gene id: ENSG00000234263
Gene Name: RP3-325F22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-473
0.038
1
6mer
178-195
0.004
2
RP11-308D13.3
hsa-miR-143-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000561977
Biotype: lincRNA
Gene id: ENSG00000261268
Gene Name: RP11-308D13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-493
0.039
5
6mer
1004-1029
0.003
3
LINC00284
hsa-miR-143-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000439707
Biotype: lincRNA
Gene id: ENSG00000233725
Gene Name: LINC00284
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1867-1885
0.042
2
XLOC_000118
hsa-miR-143-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000879
Biotype: transcript isomorph
Gene id: XLOC_000118
Gene Name: XLOC_000118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2560-2576
0.017
0
7mer
2900-2912
0.012
0
8mer+wobble
2638-2654
0.008
0
6mer
139-166
0.004
1
6mer
1933-1956
0.002
0
XLOC_007883
hsa-miR-143-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016892
Biotype: transcript isomorph
Gene id: XLOC_007883
Gene Name: XLOC_007883
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-189
0.042
1
XLOC_006933
hsa-miR-143-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014864
Biotype: transcript isomorph
Gene id: XLOC_006933
Gene Name: XLOC_006933
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1051-1077
0.042
1
CASC2
hsa-miR-143-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000426021
Biotype: antisense
Gene id: ENSG00000177640
Gene Name: CASC2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3082-3107
0.026
1
7mer
604-627
0.016
1
XLOC_000633
hsa-miR-143-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001335
Biotype: transcript isomorph
Gene id: XLOC_000633
Gene Name: XLOC_000633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7266-7283
0.025
1
6mer
7125-7151
0.003
1
6mer
7104-7116
0.003
1
6mer
6362-6376
0.002
0
6mer
1604-1621
0.002
1
6mer
983-1003
0.002
1
6mer
5585-5612
0.002
1
6mer
6097-6122
0.001
0
6mer
1875-1902
0.001
1
6mer
1026-1050
0.001
1
DNAJC9-AS1
hsa-miR-143-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440197
Biotype: antisense
Gene id: ENSG00000236756
Gene Name: DNAJC9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
352-367
0.025
7
8mer
2197-2218
0.012
0
7mer
2217-2235
0.005
2
NR2F1-AS1
hsa-miR-143-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606188
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
244-261
0.037
2
6mer
392-406
0.005
1
CTC-498M16.2
hsa-miR-143-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506041
Biotype: lincRNA
Gene id: ENSG00000250156
Gene Name: CTC-498M16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
839-862
0.033
1
7mer
919-940
0.005
0
6mer
1299-1309
0.004
1
CYP4F35P
hsa-miR-143-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582957
Biotype: lincRNA
Gene id: ENSG00000265787
Gene Name: CYP4F35P
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2312-2336
0.034
0
7mer
1717-1741
0.008
0
RP11-1096G20.5
hsa-miR-143-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580270
Biotype: antisense
Gene id: ENSG00000266368
Gene Name: RP11-1096G20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-68
0.042
1
XLOC_005972
hsa-miR-143-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013326
Biotype: transcript isomorph
Gene id: XLOC_005972
Gene Name: XLOC_005972
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-357
0.014
1
8mer
1605-1629
0.013
0
7mer
1773-1797
0.012
0
6mer
1156-1179
0.001
0
6mer
1078-1096
0.001
0
RP11-1084E5.1
hsa-miR-143-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524134
Biotype: antisense
Gene id: ENSG00000253796
Gene Name: RP11-1084E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
181-206
0.042
0
XLOC_001200
hsa-miR-143-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001819
Biotype: transcript isomorph
Gene id: XLOC_001200
Gene Name: XLOC_001200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8403-8427
0.010
0
7mer
1872-1896
0.008
1
7mer
2289-2312
0.008
0
7mer
1420-1445
0.006
1
7mer
7356-7376
0.003
0
7mer
7575-7601
0.002
2
6mer
7213-7234
0.002
4
6mer
1589-1612
0.001
1
6mer
5566-5589
0.001
1
SOX2-OT
hsa-miR-143-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493521
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1113-1134
0.042
4
TPTEP1
hsa-miR-143-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415121
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
284-310
0.015
1
6mer
597-616
0.014
1
6mer
433-452
0.014
1
XLOC_003233
hsa-miR-143-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006631
Biotype: transcript isomorph
Gene id: XLOC_003233
Gene Name: XLOC_003233
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
245-264
0.042
1
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