LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-424D14.1
hsa-miR-143-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425517
Biotype: lincRNA
Gene id: ENSG00000223883
Gene Name: RP11-424D14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-547
0.043
3
MED4-AS1
hsa-miR-143-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000422483
Biotype: antisense
Gene id: ENSG00000229111
Gene Name: MED4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
468-493
0.029
9
6mer
409-423
0.008
6
7mer
321-347
0.007
2
XLOC_001973
hsa-miR-143-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002742
Biotype: transcript isomorph
Gene id: XLOC_001973
Gene Name: XLOC_001973
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-48
0.043
2
XLOC_001121
hsa-miR-143-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001746
Biotype: transcript isomorph
Gene id: XLOC_001121
Gene Name: XLOC_001121
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1428-1451
0.043
2
RP11-157E14.1
hsa-miR-143-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000432244
Biotype: lincRNA
Gene id: ENSG00000234265
Gene Name: RP11-157E14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
520-536
0.027
0
7mer
40-60
0.014
0
6mer
300-322
0.003
0
RP11-68I3.5
hsa-miR-143-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581240
Biotype: antisense
Gene id: ENSG00000263370
Gene Name: RP11-68I3.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-141
0.032
1
7mer
82-103
0.011
0
XLOC_009836
hsa-miR-143-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020518
Biotype: transcript isomorph
Gene id: XLOC_009836
Gene Name: XLOC_009836
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1251-1269
0.028
1
7mer
611-625
0.010
1
6mer
978-998
0.003
0
6mer
986-1009
0.002
1
AC005537.2
hsa-miR-143-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000585996
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-131
0.027
0
6mer
117-140
0.015
1
LOC100505515
hsa-miR-143-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_109870.1
Biotype: lincRNA
Gene id: NR_109870.1 (gene)
Gene Name: LOC100505515
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
518-534
0.027
0
7mer
38-58
0.014
0
6mer
298-320
0.003
0
RP11-388P9.2
hsa-miR-143-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619719
Biotype: antisense
Gene id: ENSG00000232682
Gene Name: RP11-388P9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
209-234
0.023
11
7mer
277-303
0.020
7
XXbac-B33L19.6
hsa-miR-143-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000614584
Biotype: lincRNA
Gene id: ENSG00000277017
Gene Name: XXbac-B33L19.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-53
0.043
1
FAM157C
hsa-miR-143-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570230
Biotype: lincRNA
Gene id: ENSG00000260528
Gene Name: FAM157C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2152-2168
0.028
0
7mer
455-478
0.005
Not Conserved
6mer
1899-1917
0.004
1
6mer
2103-2124
0.003
0
6mer
669-692
0.003
0
DNAJC9-AS1
hsa-miR-143-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038373.1
Biotype: antisense
Gene id: NR_038373.1 (gene)
Gene Name: DNAJC9-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
345-360
0.025
7
8mer
2190-2211
0.012
0
7mer
2210-2228
0.005
2
BAIAP2-AS1
hsa-miR-143-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577066
Biotype: lincRNA
Gene id: ENSG00000226137
Gene Name: BAIAP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2595-2616
0.021
3
7mer
350-373
0.010
Not Conserved
6mer
742-765
0.003
1
6mer
4229-4256
0.003
0
6mer
354-373
0.002
Not Conserved
6mer
1282-1305
0.002
1
6mer
3201-3219
0.001
1
RAMP2-AS1
hsa-miR-143-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591082
Biotype: lincRNA
Gene id: ENSG00000197291
Gene Name: RAMP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
314-330
0.035
4
6mer
118-133
0.004
0
6mer
306-330
0.003
1
CTD-2269F5.1
hsa-miR-143-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502253
Biotype: antisense
Gene id: ENSG00000250320
Gene Name: CTD-2269F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
757-778
0.032
1
6mer
37-56
0.006
1
6mer
432-449
0.005
3
ZBTB20-AS4
hsa-miR-143-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472323
Biotype: lincRNA
Gene id: ENSG00000242767
Gene Name: ZBTB20-AS4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
562-578
0.022
0
7mer
607-629
0.021
1
XLOC_004100
hsa-miR-143-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007858
Biotype: transcript isomorph
Gene id: XLOC_004100
Gene Name: XLOC_004100
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
475-490
0.039
5
6mer
1001-1026
0.003
3
RAMP2-AS1
hsa-miR-143-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589716
Biotype: lincRNA
Gene id: ENSG00000197291
Gene Name: RAMP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1433-1449
0.031
4
6mer
171-194
0.005
1
6mer
568-590
0.003
1
6mer
1425-1449
0.002
1
C8orf49
hsa-miR-143-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000625198
Biotype: lincRNA
Gene id: ENSG00000255394
Gene Name: C8orf49
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
190-207
0.042
Not Conserved
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