LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
LINC00293
hsa-miR-143-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-317
0.044
1
TMPO-AS1
hsa-miR-143-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_027157.1
Biotype: antisense
Gene id: NR_027157.1 (gene)
Gene Name: TMPO-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
630-644
0.024
3
6mer
98-110
0.006
1
6mer
326-353
0.004
1
6mer
2893-2918
0.003
5
6mer
551-563
0.002
2
6mer
296-310
0.002
1
6mer
1336-1357
0.002
1
TTN-AS1
hsa-miR-143-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587944
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
794-814
0.016
5
8mer
109-131
0.014
2
8mer
876-896
0.014
3
ARHGEF38-IT1
hsa-miR-143-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512262
Biotype: sense_intronic
Gene id: ENSG00000249885
Gene Name: ARHGEF38-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-388
0.044
2
RP11-347J14.7
hsa-miR-143-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423499
Biotype: lincRNA
Gene id: ENSG00000231140
Gene Name: RP11-347J14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
728-751
0.025
0
6mer
172-193
0.019
1
XLOC_005755
hsa-miR-143-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012198
Biotype: transcript isomorph
Gene id: XLOC_005755
Gene Name: XLOC_005755
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
250-258
0.044
0
RP11-244H3.1
hsa-miR-143-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417456
Biotype: sense_overlapping
Gene id: ENSG00000241014
Gene Name: RP11-244H3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-187
0.044
0
CH17-264L24.1
hsa-miR-143-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4974-4999
0.031
0
7mer
7045-7064
0.005
0
7mer
5501-5523
0.003
0
6mer
5950-5962
0.002
0
6mer
4805-4830
0.002
0
NR2F1-AS1
hsa-miR-143-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606739
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
241-258
0.030
2
7mer
681-693
0.009
3
6mer
389-403
0.004
1
RP11-820I16.1
hsa-miR-143-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590055
Biotype: lincRNA
Gene id: ENSG00000267079
Gene Name: RP11-820I16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-189
0.028
2
7mer
170-189
0.010
0
6mer
31-54
0.005
0
RP11-467K18.2
hsa-miR-143-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000521394
Biotype: antisense
Gene id: ENSG00000253973
Gene Name: RP11-467K18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
782-805
0.037
4
7mer
716-731
0.007
1
LINC01410
hsa-miR-143-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427509
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
425-435
0.044
0
TMPO-AS1
hsa-miR-143-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548760
Biotype: antisense
Gene id: ENSG00000257167
Gene Name: TMPO-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
630-644
0.024
3
6mer
98-110
0.006
1
6mer
326-353
0.004
1
6mer
2893-2918
0.003
5
6mer
551-563
0.002
2
6mer
296-310
0.002
1
6mer
1336-1357
0.002
1
XLOC_011753
hsa-miR-143-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024436
Biotype: transcript isomorph
Gene id: XLOC_011753
Gene Name: XLOC_011753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
740-763
0.017
1
7mer
6060-6084
0.014
1
7mer
5103-5118
0.005
1
6mer
6691-6716
0.004
2
6mer
875-894
0.002
2
6mer
3530-3554
0.002
0
RAMP2-AS1
hsa-miR-143-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592195
Biotype: lincRNA
Gene id: ENSG00000197291
Gene Name: RAMP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
861-877
0.041
4
6mer
853-877
0.003
1
RP11-863P13.4
hsa-miR-143-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566351
Biotype: lincRNA
Gene id: ENSG00000205037
Gene Name: RP11-863P13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
47-66
0.044
1
RAMP2-AS1
hsa-miR-143-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587694
Biotype: lincRNA
Gene id: ENSG00000197291
Gene Name: RAMP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1416-1432
0.033
4
6mer
154-177
0.005
1
6mer
551-573
0.003
1
6mer
1408-1432
0.002
1
LINC01249
hsa-miR-143-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412134
Biotype: lincRNA
Gene id: ENSG00000231532
Gene Name: LINC01249
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
938-964
0.026
9
7mer
889-899
0.007
6
6mer
45-65
0.004
2
6mer
324-335
0.003
1
6mer
2277-2292
0.003
1
USP2-AS1
hsa-miR-143-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_034160.1
Biotype: antisense
Gene id: NR_034160.1 (gene)
Gene Name: USP2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
752-776
0.041
1
6mer
666-679
0.002
0
RP11-348F1.3
hsa-miR-143-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000425150
Biotype: antisense
Gene id: ENSG00000229151
Gene Name: RP11-348F1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
273-294
0.043
1
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