LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
CDKN2B-AS1
hsa-miR-143-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428597
Biotype: antisense
Gene id: ENSG00000240498
Gene Name: CDKN2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-187
0.024
1
7mer
3482-3504
0.017
1
6mer
2832-2856
0.003
1
6mer
1630-1645
0.002
2
LINC01447
hsa-miR-143-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429010
Biotype: lincRNA
Gene id: ENSG00000236078
Gene Name: LINC01447
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
614-629
0.040
0
7mer
1528-1542
0.005
1
XLOC_000233
hsa-miR-143-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000218
Biotype: transcript isomorph
Gene id: XLOC_000233
Gene Name: XLOC_000233
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
685-706
0.045
2
AC108676.1
hsa-miR-143-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000455557
Biotype: sense_overlapping
Gene id: ENSG00000244675
Gene Name: AC108676.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-210
0.039
1
6mer
2345-2358
0.003
1
6mer
2679-2703
0.002
0
6mer
2216-2229
0.001
1
XLOC_002973
hsa-miR-143-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005695
Biotype: transcript isomorph
Gene id: XLOC_002973
Gene Name: XLOC_002973
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
491-514
0.026
3
8mer
996-1019
0.013
1
6mer
491-509
0.005
4
AC027763.2
hsa-miR-143-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000399541
Biotype: antisense
Gene id: ENSG00000215067
Gene Name: AC027763.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-135
0.041
0
6mer
421-442
0.004
0
SOX2-OT
hsa-miR-143-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000477928
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
722-743
0.045
4
CTA-992D9.8
hsa-miR-143-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623947
Biotype: lincRNA
Gene id: ENSG00000280025
Gene Name: CTA-992D9.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
963-983
0.034
1
6mer
3699-3722
0.005
3
6mer
3367-3380
0.003
0
6mer
2016-2020
0.002
0
6mer
2336-2352
0.001
1
XLOC_007304
hsa-miR-143-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016545
Biotype: transcript isomorph
Gene id: XLOC_007304
Gene Name: XLOC_007304
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-79
0.024
5
8mer
1505-1530
0.021
2
LINC01337
hsa-miR-143-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515871
Biotype: lincRNA
Gene id: ENSG00000251221
Gene Name: LINC01337
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-380
0.045
2
XLOC_009283
hsa-miR-143-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019480
Biotype: transcript isomorph
Gene id: XLOC_009283
Gene Name: XLOC_009283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-682
0.019
1
7mer
175-195
0.010
3
6mer
1892-1909
0.005
0
6mer
1061-1084
0.004
4
6mer
1442-1455
0.003
1
6mer
551-569
0.002
Not Conserved
6mer
1453-1473
0.002
2
XLOC_012768
hsa-miR-143-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026421
Biotype: transcript isomorph
Gene id: XLOC_012768
Gene Name: XLOC_012768
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
636-661
0.029
1
7mer
76-98
0.010
1
6mer
1061-1087
0.006
2
XLOC_011957
hsa-miR-143-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024673
Biotype: transcript isomorph
Gene id: XLOC_011957
Gene Name: XLOC_011957
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1026-1050
0.041
2
6mer
76-102
0.004
1
AP001610.5
hsa-miR-143-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000411427
Biotype: antisense
Gene id: ENSG00000228318
Gene Name: AP001610.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-526
0.031
1
7mer
21-41
0.013
1
RP11-21L23.2
hsa-miR-143-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000566747
Biotype: sense_overlapping
Gene id: ENSG00000261578
Gene Name: RP11-21L23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
864-882
0.031
2
7mer
307-321
0.010
0
6mer
3996-4015
0.003
1
CTD-2083E4.4
hsa-miR-143-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000565521
Biotype: retained_intron
Gene id: ENSG00000260774
Gene Name: CTD-2083E4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-271
0.036
1
7mer
1497-1513
0.004
1
6mer
637-658
0.003
1
6mer
614-632
0.002
1
SOX2-OT
hsa-miR-143-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466034
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-848
0.044
4
XLOC_005210
hsa-miR-143-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012441
Biotype: transcript isomorph
Gene id: XLOC_005210
Gene Name: XLOC_005210
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
441-463
0.029
0
7mer
975-980
0.009
1
6mer
720-736
0.004
0
6mer
740-760
0.003
0
RP11-552I14.1
hsa-miR-143-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552759
Biotype: lincRNA
Gene id: ENSG00000257860
Gene Name: RP11-552I14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
477-493
0.044
2
RP11-69H14.6
hsa-miR-143-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616229
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
524-542
0.044
3
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