LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
FAM66C
hsa-miR-143-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535567
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
626-643
0.031
0
7mer
247-268
0.015
0
RP11-430H10.3
hsa-miR-143-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534604
Biotype: lincRNA
Gene id: ENSG00000254651
Gene Name: RP11-430H10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-472
0.043
6
6mer
132-154
0.003
1
MIR7515HG
hsa-miR-143-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585872
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-228
0.032
3
7mer
632-647
0.014
1
RP5-832C2.5
hsa-miR-143-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000366221
Biotype: lincRNA
Gene id: ENSG00000215014
Gene Name: RP5-832C2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1837-1860
0.024
0
8mer
1519-1539
0.022
Not Conserved
RP11-429A20.4
hsa-miR-143-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538202
Biotype: lincRNA
Gene id: ENSG00000256654
Gene Name: RP11-429A20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
714-719
0.026
1
6mer
81-95
0.007
4
6mer
618-633
0.005
2
6mer
138-160
0.005
1
6mer
523-550
0.004
1
RP11-116D17.5
hsa-miR-143-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617845
Biotype: lincRNA
Gene id: ENSG00000276972
Gene Name: RP11-116D17.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
223-244
0.036
Not Conserved
6mer
379-395
0.010
4
XLOC_006349
hsa-miR-143-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013687
Biotype: transcript isomorph
Gene id: XLOC_006349
Gene Name: XLOC_006349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-593
0.046
0
RP11-335E6.3
hsa-miR-143-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449140
Biotype: lincRNA
Gene id: ENSG00000228734
Gene Name: RP11-335E6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
790-811
0.046
2
RP11-372E1.4
hsa-miR-143-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000476385
Biotype: antisense
Gene id: ENSG00000243818
Gene Name: RP11-372E1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-86
0.038
1
8mer
1370-1388
0.008
0
CCAT2
hsa-miR-143-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_109834.1
Biotype: lincRNA
Gene id: NR_109834.1 (gene)
Gene Name: CCAT2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1494-1512
0.032
5
7mer
1383-1398
0.010
5
6mer
536-555
0.004
5
LINC00528
hsa-miR-143-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000600723
Biotype: lincRNA
Gene id: ENSG00000269220
Gene Name: LINC00528
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1927-1951
0.046
1
ZNF385D-AS1
hsa-miR-143-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000412369
Biotype: antisense
Gene id: ENSG00000225542
Gene Name: ZNF385D-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
406-433
0.046
1
CTD-2541J13.2
hsa-miR-143-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583493
Biotype: antisense
Gene id: ENSG00000263424
Gene Name: CTD-2541J13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-304
0.024
5
7mer
240-253
0.015
2
6mer
907-928
0.006
8
LINC00638
hsa-miR-143-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555578
Biotype: lincRNA
Gene id: ENSG00000258701
Gene Name: LINC00638
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1462-1476
0.024
1
6mer
2112-2128
0.014
1
6mer
1163-1177
0.007
1
FAM66C
hsa-miR-143-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540566
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
112-133
0.046
0
RP11-69H14.6
hsa-miR-143-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000610950
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-630
0.026
3
7mer
904-913
0.011
0
6mer
972-993
0.009
4
LOC100506713
hsa-miR-143-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_040089.1
Biotype: antisense
Gene id: NR_040089.1 (gene)
Gene Name: LOC100506713
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-121
0.042
0
6mer
407-428
0.004
0
RP11-136B18.2
hsa-miR-143-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422844
Biotype: lincRNA
Gene id: ENSG00000234464
Gene Name: RP11-136B18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-48
0.045
2
AF001548.6
hsa-miR-143-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577048
Biotype: antisense
Gene id: ENSG00000263065
Gene Name: AF001548.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-396
0.031
9
6mer
427-449
0.014
12
XLOC_004144
hsa-miR-143-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008639
Biotype: transcript isomorph
Gene id: XLOC_004144
Gene Name: XLOC_004144
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3784-3799
0.043
2
6mer
3246-3262
0.002
0
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