LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-740P5.2
hsa-miR-143-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457440
Biotype: lincRNA
Gene id: ENSG00000233234
Gene Name: RP11-740P5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
506-528
0.041
2
6mer
499-521
0.007
0
XLOC_011693
hsa-miR-143-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024250
Biotype: transcript isomorph
Gene id: XLOC_011693
Gene Name: XLOC_011693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
29-53
0.020
0
6mer
1970-1987
0.019
0
6mer
1104-1127
0.008
0
XLOC_007167
hsa-miR-143-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015110
Biotype: transcript isomorph
Gene id: XLOC_007167
Gene Name: XLOC_007167
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-133
0.047
4
RP11-705O24.1
hsa-miR-143-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523728
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-34
0.047
1
XLOC_004536
hsa-miR-143-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010079
Biotype: transcript isomorph
Gene id: XLOC_004536
Gene Name: XLOC_004536
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-376
0.031
2
7mer
1386-1412
0.013
2
6mer
291-305
0.004
1
SLC14A2-AS1
hsa-miR-143-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586330
Biotype: antisense
Gene id: ENSG00000267097
Gene Name: SLC14A2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
430-445
0.033
5
7mer
308-317
0.010
3
6mer
257-280
0.004
1
XLOC_001223
hsa-miR-143-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001838
Biotype: transcript isomorph
Gene id: XLOC_001223
Gene Name: XLOC_001223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
969-992
0.047
1
C8orf49
hsa-miR-143-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000525043
Biotype: lincRNA
Gene id: ENSG00000255394
Gene Name: C8orf49
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
321-338
0.038
Not Conserved
6mer
1685-1708
0.006
1
6mer
1746-1761
0.003
0
RP11-672L10.3
hsa-miR-143-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582554
Biotype: antisense
Gene id: ENSG00000265671
Gene Name: RP11-672L10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-62
0.047
2
RP11-705O24.1
hsa-miR-143-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521501
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-33
0.047
1
AC019117.1
hsa-miR-143-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419463
Biotype: lincRNA
Gene id: ENSG00000236318
Gene Name: AC019117.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-289
0.047
4
MIR4435-1HG
hsa-miR-143-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603827
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1465-1479
0.043
0
6mer
1509-1534
0.004
0
XLOC_007800
hsa-miR-143-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016434
Biotype: transcript isomorph
Gene id: XLOC_007800
Gene Name: XLOC_007800
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
289-313
0.037
0
6mer
408-433
0.006
6
6mer
380-396
0.003
0
MIR7515HG
hsa-miR-143-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591053
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-90
0.034
3
7mer
721-736
0.013
1
XLOC_003228
hsa-miR-143-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007245
Biotype: transcript isomorph
Gene id: XLOC_003228
Gene Name: XLOC_003228
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-439
0.041
1
7mer
3268-3285
0.006
0
ZNF833P
hsa-miR-143-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000344893
Biotype: lincRNA
Gene id: ENSG00000197332
Gene Name: ZNF833P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3144-3163
0.016
1
8mer
611-636
0.013
1
8mer
1824-1844
0.011
1
7mer
1218-1242
0.006
Not Conserved
6mer
146-170
0.002
0
XLOC_007942
hsa-miR-143-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7292-7304
0.030
1
7mer
2709-2734
0.007
0
6mer
4296-4311
0.002
2
6mer
2543-2561
0.002
1
6mer
3730-3750
0.002
2
6mer
7499-7526
0.002
0
6mer
3294-3321
0.002
0
LOC102659288
hsa-miR-143-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110015.1
Biotype: lincRNA
Gene id: NR_110015.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-171
0.043
4
6mer
1118-1136
0.004
2
RP5-1014D13.2
hsa-miR-143-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7409-7433
0.008
0
7mer
10022-10046
0.008
0
7mer
10397-10420
0.006
0
7mer
10236-10254
0.003
0
6mer
11521-11533
0.002
4
6mer
12437-12461
0.002
4
6mer
15166-15185
0.002
0
6mer
7827-7846
0.002
2
6mer
6964-6982
0.002
0
6mer
6663-6685
0.001
Not Conserved
6mer
3161-3184
0.001
0
6mer
13615-13636
0.001
1
6mer
16101-16125
0.001
0
6mer
18331-18356
0.001
0
6mer
18167-18191
0.001
0
6mer
14706-14728
0.001
0
6mer
13132-13154
0.001
0
6mer
16970-16984
0.001
2
6mer
8865-8888
0.001
0
6mer
1960-1969
0.001
Not Conserved
6mer
12640-12664
0.001
Not Conserved
6mer
4010-4034
0.001
0
6mer
4302-4326
0.001
0
6mer
7015-7033
0.000
0
XLOC_014144
hsa-miR-143-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029501
Biotype: transcript isomorph
Gene id: XLOC_014144
Gene Name: XLOC_014144
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1275-1299
0.046
1
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