LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
XLOC_000282
hsa-miR-143-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001017
Biotype: transcript isomorph
Gene id: XLOC_000282
Gene Name: XLOC_000282
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-76
0.049
2
XLOC_000529
hsa-miR-143-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001247
Biotype: transcript isomorph
Gene id: XLOC_000529
Gene Name: XLOC_000529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3810-3825
0.029
1
8mer
896-920
0.007
0
6mer
4055-4078
0.005
0
6mer
106-122
0.005
1
6mer
4105-4131
0.002
1
6mer
2228-2251
0.001
0
CITF22-49D8.1
hsa-miR-143-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000434707
Biotype: lincRNA
Gene id: ENSG00000224715
Gene Name: CITF22-49D8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
442-459
0.043
2
8mer
3862-3882
0.004
Not Conserved
6mer
176-200
0.002
0
XLOC_012315
hsa-miR-143-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025982
Biotype: transcript isomorph
Gene id: XLOC_012315
Gene Name: XLOC_012315
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2487-2512
0.017
0
7mer
399-414
0.012
1
7mer
2763-2779
0.008
0
6mer
325-345
0.004
1
6mer
2322-2343
0.004
0
7mer
1910-1937
0.003
0
6mer
1905-1932
0.002
Not Conserved
LINC00200
hsa-miR-143-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000583117
Biotype: lincRNA
Gene id: ENSG00000229205
Gene Name: LINC00200
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-223
0.049
1
RP11-162A12.4
hsa-miR-143-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000622010
Biotype: lincRNA
Gene id: ENSG00000278107
Gene Name: RP11-162A12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-254
0.049
1
LINC00598
hsa-miR-143-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616706
Biotype: lincRNA
Gene id: ENSG00000215483
Gene Name: LINC00598
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
583-606
0.044
0
6mer
1813-1831
0.004
2
RP11-580I1.2
hsa-miR-143-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561964
Biotype: lincRNA
Gene id: ENSG00000261621
Gene Name: RP11-580I1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-254
0.049
1
NARF-IT1
hsa-miR-143-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584012
Biotype: sense_intronic
Gene id: ENSG00000266236
Gene Name: NARF-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
676-700
0.038
1
7mer
409-431
0.011
1
RP11-313F23.4
hsa-miR-143-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545923
Biotype: lincRNA
Gene id: ENSG00000255652
Gene Name: RP11-313F23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
221-241
0.047
1
6mer
568-590
0.002
Not Conserved
LINC01301
hsa-miR-143-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000534117
Biotype: lincRNA
Gene id: ENSG00000251396
Gene Name: LINC01301
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-42
0.033
2
7mer
169-193
0.015
1
AC091814.2
hsa-miR-143-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000412084
Biotype: lincRNA
Gene id: ENSG00000225231
Gene Name: AC091814.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
592-605
0.048
2
TEX41
hsa-miR-143-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596747
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-75
0.048
9
RP11-69H14.6
hsa-miR-143-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558896
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-132
0.036
3
7mer
406-415
0.008
0
6mer
474-495
0.004
4
XLOC_012254
hsa-miR-143-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025435
Biotype: transcript isomorph
Gene id: XLOC_012254
Gene Name: XLOC_012254
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
89-111
0.048
1
RP11-576I22.2
hsa-miR-143-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416416
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-88
0.048
8
RP11-13P5.2
hsa-miR-143-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419064
Biotype: antisense
Gene id: ENSG00000233682
Gene Name: RP11-13P5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-239
0.048
3
RP11-410N8.3
hsa-miR-143-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000413983
Biotype: antisense
Gene id: ENSG00000233293
Gene Name: RP11-410N8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-31
0.048
8
XLOC_011054
hsa-miR-143-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022770
Biotype: transcript isomorph
Gene id: XLOC_011054
Gene Name: XLOC_011054
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
807-830
0.048
4
RP11-366F6.2
hsa-miR-143-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000424126
Biotype: antisense
Gene id: ENSG00000229967
Gene Name: RP11-366F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-209
0.040
1
7mer
243-255
0.008
0
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