LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
LINC00865
hsa-miR-143-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448963
Biotype: lincRNA
Gene id: ENSG00000232229
Gene Name: LINC00865
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-607
0.046
4
6mer
144-164
0.005
1
HSD52
hsa-miR-143-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624582
Biotype: lincRNA
Gene id: ENSG00000224609
Gene Name: HSD52
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-531
0.030
3
8mer
704-728
0.021
1
RP4-610C12.4
hsa-miR-143-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000380888
Biotype: lincRNA
Gene id: ENSG00000205611
Gene Name: RP4-610C12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
508-529
0.019
0
8mer
849-868
0.012
Not Conserved
8mer
678-699
0.011
Not Conserved
9mer
1188-1209
0.008
Not Conserved
AC002116.8
hsa-miR-143-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000473572
Biotype: retained_intron
Gene id: ENSG00000248101
Gene Name: AC002116.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
954-976
0.048
10
6mer
576-595
0.002
1
CTD-2571L23.8
hsa-miR-143-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599924
Biotype: lincRNA
Gene id: ENSG00000268746
Gene Name: CTD-2571L23.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-328
0.050
0
RP11-104N10.1
hsa-miR-143-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565310
Biotype: antisense
Gene id: ENSG00000261118
Gene Name: RP11-104N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-274
0.048
2
6mer
202-229
0.002
0
XLOC_005821
hsa-miR-143-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012265
Biotype: transcript isomorph
Gene id: XLOC_005821
Gene Name: XLOC_005821
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-47
0.034
2
7mer
246-262
0.016
2
XLOC_013275
hsa-miR-143-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027244
Biotype: transcript isomorph
Gene id: XLOC_013275
Gene Name: XLOC_013275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-408
0.050
0
CTD-2337I7.1
hsa-miR-143-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526091
Biotype: lincRNA
Gene id: ENSG00000255345
Gene Name: CTD-2337I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1088-1108
0.046
2
6mer
168-177
0.003
0
AC005307.3
hsa-miR-143-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585697
Biotype: lincRNA
Gene id: ENSG00000267243
Gene Name: AC005307.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
57-72
0.045
0
6mer
175-190
0.005
2
AC078842.4
hsa-miR-143-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447529
Biotype: lincRNA
Gene id: ENSG00000231114
Gene Name: AC078842.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1737-1758
0.032
2
7mer
1242-1256
0.014
2
6mer
661-672
0.003
4
AC138035.2
hsa-miR-143-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499986
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-117
0.050
1
XLOC_010013
hsa-miR-143-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020714
Biotype: transcript isomorph
Gene id: XLOC_010013
Gene Name: XLOC_010013
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
653-666
0.050
2
XLOC_005637
hsa-miR-143-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012107
Biotype: transcript isomorph
Gene id: XLOC_005637
Gene Name: XLOC_005637
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-503
0.050
4
LINC00598
hsa-miR-143-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000542632
Biotype: lincRNA
Gene id: ENSG00000215483
Gene Name: LINC00598
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
581-604
0.045
0
6mer
1811-1829
0.005
2
RP11-266K4.13
hsa-miR-143-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
325-337
0.041
1
6mer
890-913
0.008
1
RP11-618L22.1
hsa-miR-143-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621214
Biotype: lincRNA
Gene id: ENSG00000274723
Gene Name: RP11-618L22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
558-571
0.049
1
CTA-280A3.2
hsa-miR-143-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623760
Biotype: lincRNA
Gene id: ENSG00000279712
Gene Name: CTA-280A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9371-9393
0.024
1
9mer
1512-1537
0.015
0
7mer
2186-2209
0.004
0
7mer
6219-6236
0.003
1
6mer
5119-5143
0.001
0
6mer
7084-7097
0.001
0
PPP1R26-AS1
hsa-miR-143-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000455039
Biotype: antisense
Gene id: ENSG00000225361
Gene Name: PPP1R26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-488
0.025
0
8mer
428-445
0.021
1
6mer
212-230
0.003
1
AC004837.5
hsa-miR-143-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435766
Biotype: antisense
Gene id: ENSG00000228554
Gene Name: AC004837.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-477
0.049
1
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