LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-624L4.2
hsa-miR-143-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560552
Biotype: lincRNA
Gene id: ENSG00000259269
Gene Name: RP11-624L4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-50
0.048
5
6mer
514-533
0.004
2
TEX41
hsa-miR-143-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602041
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-75
0.052
9
RP1-140C12.2
hsa-miR-143-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564198
Biotype: sense_overlapping
Gene id: ENSG00000261003
Gene Name: RP1-140C12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4970-4989
0.052
0
TEX41
hsa-miR-143-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596970
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-173
0.052
9
XLOC_014197
hsa-miR-143-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029335
Biotype: transcript isomorph
Gene id: XLOC_014197
Gene Name: XLOC_014197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4472-4496
0.035
0
6mer
52-70
0.008
5
6mer
181-197
0.007
6
6mer
4766-4782
0.002
2
XLOC_008338
hsa-miR-143-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017666
Biotype: transcript isomorph
Gene id: XLOC_008338
Gene Name: XLOC_008338
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-259
0.031
1
7mer
1630-1655
0.013
1
7mer
679-699
0.008
1
LL22NC03-22D1.1
hsa-miR-143-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11823-11849
0.013
0
7mer
20469-20493
0.008
1
8mer
10133-10150
0.006
0
7mer
17345-17367
0.006
4
7mer
4156-4169
0.004
1
7mer
3950-3969
0.003
Not Conserved
7mer
15365-15383
0.003
0
6mer
392-419
0.003
0
6mer
16047-16065
0.002
0
6mer
27716-27741
0.002
0
6mer
20702-20723
0.001
1
6mer
10971-10988
0.001
1
6mer
11009-11034
0.001
1
XLOC_003662
hsa-miR-143-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008207
Biotype: transcript isomorph
Gene id: XLOC_003662
Gene Name: XLOC_003662
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-169
0.052
1
CTB-131B5.5
hsa-miR-143-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607850
Biotype: retained_intron
Gene id: ENSG00000254363
Gene Name: CTB-131B5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4769-4794
0.023
3
7mer
4566-4582
0.008
1
7mer
1811-1827
0.007
0
7mer
5764-5787
0.006
1
7mer
2769-2796
0.005
1
6mer
4992-5011
0.003
3
RP1-78B3.1
hsa-miR-143-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000625157
Biotype: lincRNA
Gene id: ENSG00000279652
Gene Name: RP1-78B3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2890-2913
0.018
1
7mer
5204-5217
0.009
1
8mer
3175-3189
0.005
1
6mer
7889-7914
0.003
1
6mer
652-674
0.002
1
6mer
7730-7749
0.002
1
6mer
5750-5767
0.002
1
6mer
2680-2694
0.002
3
6mer
5978-5995
0.002
0
6mer
4103-4126
0.002
1
6mer
1957-1976
0.002
1
6mer
3160-3184
0.002
1
6mer
6105-6125
0.001
1
RP11-580I1.2
hsa-miR-143-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566676
Biotype: lincRNA
Gene id: ENSG00000261621
Gene Name: RP11-580I1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-85
0.052
1
RP11-269F21.1
hsa-miR-143-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506068
Biotype: lincRNA
Gene id: ENSG00000250855
Gene Name: RP11-269F21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-264
0.051
2
RP11-348J24.2
hsa-miR-143-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507217
Biotype: lincRNA
Gene id: ENSG00000250049
Gene Name: RP11-348J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
490-508
0.051
1
LOC102659288
hsa-miR-143-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110014.1
Biotype: lincRNA
Gene id: NR_110014.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-239
0.047
4
6mer
1186-1204
0.004
2
LINC00298
hsa-miR-143-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426969
Biotype: lincRNA
Gene id: ENSG00000235665
Gene Name: LINC00298
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-48
0.051
2
RP11-703C10.1
hsa-miR-143-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505498
Biotype: antisense
Gene id: ENSG00000250908
Gene Name: RP11-703C10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-237
0.041
3
6mer
26-52
0.006
1
6mer
219-237
0.003
1
XLOC_011171
hsa-miR-143-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023302
Biotype: transcript isomorph
Gene id: XLOC_011171
Gene Name: XLOC_011171
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-29
0.048
1
6mer
329-346
0.003
Not Conserved
XLOC_006057
hsa-miR-143-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013422
Biotype: transcript isomorph
Gene id: XLOC_006057
Gene Name: XLOC_006057
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-147
0.051
1
CTD-2313J17.1
hsa-miR-143-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555325
Biotype: sense_intronic
Gene id: ENSG00000258922
Gene Name: CTD-2313J17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-429
0.040
1
7mer
232-255
0.011
0
RP11-1055B8.3
hsa-miR-143-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000612902
Biotype: lincRNA
Gene id: ENSG00000262223
Gene Name: RP11-1055B8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
271-291
0.048
1
6mer
27-51
0.002
Not Conserved
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