LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
MLK7-AS1
hsa-miR-143-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423106
Biotype: antisense
Gene id: ENSG00000238133
Gene Name: MLK7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-58
0.039
1
6mer
325-344
0.014
14
6mer
1642-1656
0.002
1
XLOC_007754
hsa-miR-143-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016379
Biotype: transcript isomorph
Gene id: XLOC_007754
Gene Name: XLOC_007754
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
397-421
0.054
1
LINC00293
hsa-miR-143-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521715
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-328
0.043
1
7mer
1065-1083
0.011
0
RP11-392P7.6
hsa-miR-143-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000607894
Biotype: antisense
Gene id: ENSG00000247498
Gene Name: RP11-392P7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
577-600
0.027
1
7mer
239-265
0.021
3
6mer
117-121
0.007
2
LINC01470
hsa-miR-143-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506723
Biotype: lincRNA
Gene id: ENSG00000249484
Gene Name: LINC01470
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-558
0.054
2
LINC00216
hsa-miR-143-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000623548
Biotype: lincRNA
Gene id: ENSG00000279636
Gene Name: LINC00216
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
868-885
0.046
0
8mer+mismatch
75-89
0.009
1
XLOC_000664
hsa-miR-143-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002275
Biotype: transcript isomorph
Gene id: XLOC_000664
Gene Name: XLOC_000664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-127
0.054
0
RP11-206L10.3
hsa-miR-143-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2961-2983
0.044
0
7mer
153-176
0.009
Not Conserved
6mer
94-118
0.002
Not Conserved
RP11-510I5.4
hsa-miR-143-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548740
Biotype: lincRNA
Gene id: ENSG00000258272
Gene Name: RP11-510I5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-208
0.045
1
7mer
236-251
0.010
1
PPP1R26-AS1
hsa-miR-143-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603624
Biotype: antisense
Gene id: ENSG00000225361
Gene Name: PPP1R26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2675-2696
0.020
0
8mer
2636-2653
0.020
1
7mer
1681-1706
0.006
1
6mer
18-37
0.005
0
6mer
2420-2438
0.002
1
LINC00200
hsa-miR-143-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425630
Biotype: lincRNA
Gene id: ENSG00000229205
Gene Name: LINC00200
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-259
0.031
1
7mer
1590-1615
0.013
1
7mer
639-659
0.010
1
FLJ32255
hsa-miR-143-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104643.1
Biotype: lincRNA
Gene id: NR_104643.1 (gene)
Gene Name: FLJ32255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-177
0.038
0
6mer
388-411
0.015
1
XLOC_003406
hsa-miR-143-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006773
Biotype: transcript isomorph
Gene id: XLOC_003406
Gene Name: XLOC_003406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
903-924
0.015
0
8mer
1827-1848
0.014
1
7mer
682-704
0.013
0
7mer
2950-2955
0.006
0
7mer
1196-1218
0.004
Not Conserved
RP11-87G24.6
hsa-miR-143-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591422
Biotype: lincRNA
Gene id: ENSG00000267521
Gene Name: RP11-87G24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-233
0.029
2
8mer
543-566
0.024
0
DNAJC9-AS1
hsa-miR-143-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000513954
Biotype: antisense
Gene id: ENSG00000236756
Gene Name: DNAJC9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
362-382
0.053
1
RP11-350A1.2
hsa-miR-143-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565943
Biotype: lincRNA
Gene id: ENSG00000260959
Gene Name: RP11-350A1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
364-380
0.040
1
6mer
431-451
0.009
0
6mer
311-329
0.004
Not Conserved
AC005253.2
hsa-miR-143-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597411
Biotype: antisense
Gene id: ENSG00000268030
Gene Name: AC005253.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1232-1256
0.037
0
7mer
628-646
0.010
2
6mer
833-850
0.003
2
6mer
1483-1504
0.002
0
DKFZP434L187
hsa-miR-143-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000455163
Biotype: lincRNA
Gene id: ENSG00000225930
Gene Name: DKFZP434L187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-262
0.052
1
PDCD4-AS1
hsa-miR-143-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_026932.1
Biotype: lincRNA
Gene id: NR_026932.1 (gene)
Gene Name: PDCD4-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-361
0.033
2
7mer
1817-1840
0.011
1
7mer
823-843
0.004
1
6mer
1884-1909
0.004
0
RAMP2-AS1
hsa-miR-143-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592670
Biotype: lincRNA
Gene id: ENSG00000197291
Gene Name: RAMP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2599-2615
0.030
4
7mer
1998-2016
0.004
2
6mer
171-194
0.004
1
6mer
568-590
0.004
1
6mer
2282-2303
0.003
2
6mer
2403-2418
0.003
0
6mer
2591-2615
0.002
1
6mer
1822-1840
0.002
0
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