LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-216M21.7
hsa-miR-143-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5-18
0.025
0
7mer
1262-1287
0.008
0
7mer
1411-1432
0.007
0
6mer
1270-1290
0.006
0
6mer
1469-1482
0.006
0
6mer
1451-1464
0.003
0
6mer
1772-1787
0.001
Not Conserved
AC090587.2
hsa-miR-143-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000507938
Biotype: sense_overlapping
Gene id: ENSG00000250404
Gene Name: AC090587.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2676-2700
0.022
1
7mer
2200-2214
0.009
0
7mer
1579-1603
0.006
0
6mer
415-432
0.005
7
6mer
2509-2534
0.005
1
6mer
2006-2019
0.002
4
6mer
1421-1444
0.002
1
6mer
512-529
0.002
1
6mer
1991-2004
0.002
0
6mer
1018-1045
0.001
1
ARPP21-AS1
hsa-miR-143-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000415706
Biotype: antisense
Gene id: ENSG00000230830
Gene Name: ARPP21-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
204-223
0.056
1
RP11-778J15.1
hsa-miR-143-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511917
Biotype: antisense
Gene id: ENSG00000250062
Gene Name: RP11-778J15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
759-779
0.032
0
7mer
205-224
0.024
3
XLOC_013011
hsa-miR-143-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026953
Biotype: transcript isomorph
Gene id: XLOC_013011
Gene Name: XLOC_013011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
365-392
0.056
0
XLOC_009387
hsa-miR-143-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020046
Biotype: transcript isomorph
Gene id: XLOC_009387
Gene Name: XLOC_009387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-44
0.035
2
7mer
55-68
0.021
2
XLOC_003653
hsa-miR-143-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008872
Biotype: transcript isomorph
Gene id: XLOC_003653
Gene Name: XLOC_003653
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
745-770
0.052
4
6mer
554-568
0.004
3
RP11-285A1.1
hsa-miR-143-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566715
Biotype: lincRNA
Gene id: ENSG00000260988
Gene Name: RP11-285A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1618-1636
0.023
1
8mer
1202-1216
0.017
0
8mer
1356-1376
0.016
1
RP4-760C5.3
hsa-miR-143-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000448580
Biotype: lincRNA
Gene id: ENSG00000231081
Gene Name: RP4-760C5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-105
0.055
1
XLOC_012704
hsa-miR-143-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026351
Biotype: transcript isomorph
Gene id: XLOC_012704
Gene Name: XLOC_012704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2375-2392
0.021
2
7mer
1991-2008
0.017
7
7mer
738-760
0.012
0
8mer
766-777
0.006
0
LINC00705
hsa-miR-143-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000417883
Biotype: lincRNA
Gene id: ENSG00000225269
Gene Name: LINC00705
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
229-253
0.044
1
7mer
549-572
0.011
1
RP11-307P5.1
hsa-miR-143-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000432506
Biotype: lincRNA
Gene id: ENSG00000227681
Gene Name: RP11-307P5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-237
0.055
2
RP11-154H23.5
hsa-miR-143-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615819
Biotype: antisense
Gene id: ENSG00000274387
Gene Name: RP11-154H23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-124
0.055
6
RP11-380B4.3
hsa-miR-143-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3455-3468
0.026
1
6mer
262-279
0.007
3
6mer
381-399
0.005
3
6mer
5121-5136
0.004
1
7mer
3064-3086
0.004
3
6mer
4945-4961
0.004
0
6mer
2031-2041
0.002
1
6mer
3908-3928
0.002
0
6mer
1441-1460
0.002
0
LINC00293
hsa-miR-143-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027013.1
Biotype: lincRNA
Gene id: NR_027013.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-317
0.044
1
7mer
1054-1072
0.012
0
TSNAX-DISC1
hsa-miR-143-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028393.1
Biotype: sense
Gene id: NR_028393.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7583-7598
0.045
1
9mer
3507-3529
0.007
1
6mer
3060-3087
0.003
7
LINC00293
hsa-miR-143-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518278
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
477-495
0.055
1
TEX41
hsa-miR-143-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599072
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
406-425
0.055
9
RP11-307P5.1
hsa-miR-143-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434985
Biotype: lincRNA
Gene id: ENSG00000227681
Gene Name: RP11-307P5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-244
0.055
2
RP11-31L22.3
hsa-miR-143-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540912
Biotype: antisense
Gene id: ENSG00000255808
Gene Name: RP11-31L22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
524-546
0.050
4
7mer
217-236
0.005
Not Conserved
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