LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
RP11-269F21.3
hsa-miR-133b
0.958
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511219
Biotype: lincRNA
Gene id: ENSG00000249815
Gene Name: RP11-269F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
101-119
0.062
1
MIR6818
hsa-miR-133b
0.957
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35150-35174
0.006
1
7mer
33729-33751
0.006
Not Conserved
7mer
38813-38834
0.005
1
6mer
48590-48594
0.005
2
9mer
14828-14852
0.005
1
7mer
42803-42826
0.004
0
6mer
5636-5640
0.003
5
6mer
1275-1279
0.003
1
6mer
4691-4695
0.002
1
6mer
9683-9703
0.002
2
6mer
21155-21173
0.002
3
6mer
6780-6792
0.002
2
6mer
37964-37977
0.002
3
6mer
18829-18853
0.002
1
6mer
45720-45739
0.002
4
6mer
2222-2247
0.002
3
6mer
10485-10505
0.002
0
6mer
28828-28844
0.002
1
6mer
44466-44488
0.002
2
6mer
2344-2358
0.001
Not Conserved
6mer
7996-8019
0.001
0
6mer
13335-13352
0.001
0
6mer
4900-4912
0.001
0
6mer
16394-16415
0.001
0
XLOC_011329
hsa-miR-133b
0.956
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023483
Biotype: transcript isomorph
Gene id: XLOC_011329
Gene Name: XLOC_011329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-527
0.028
0
7mer
442-456
0.014
1
7mer
466-480
0.010
0
7mer
490-504
0.009
0
CTD-2534J5.1
hsa-miR-133b
0.956
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517640
Biotype: lincRNA
Gene id: ENSG00000253783
Gene Name: CTD-2534J5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
347-362
0.039
1
6mer
211-236
0.013
1
6mer
49-53
0.008
0
LINC01128
hsa-miR-133b
0.955
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416570
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
589-610
0.061
2
AP000946.2
hsa-miR-133b
0.954
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000443479
Biotype: lincRNA
Gene id: ENSG00000233480
Gene Name: AP000946.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-173
0.060
1
LINC00487
hsa-miR-133b
0.954
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412528
Biotype: lincRNA
Gene id: ENSG00000205837
Gene Name: LINC00487
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9-22
0.060
3
TTN-AS1
hsa-miR-133b
0.954
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588716
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-600
0.060
1
XLOC_011287
hsa-miR-133b
0.954
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023442
Biotype: transcript isomorph
Gene id: XLOC_011287
Gene Name: XLOC_011287
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
225-229
0.008
0
6mer
62-66
0.008
0
6mer
24-42
0.008
0
6mer
202-206
0.008
0
6mer
86-90
0.007
0
6mer
179-183
0.007
0
6mer
156-160
0.007
0
6mer
109-113
0.007
0
RP11-293A10.3
hsa-miR-133b
0.953
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437400
Biotype: antisense
Gene id: ENSG00000232971
Gene Name: RP11-293A10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-371
0.060
1
LINC00680
hsa-miR-133b
0.951
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2570-2575
0.047
0
6mer
283-296
0.012
0
RP11-145O15.3
hsa-miR-133b
0.950
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000529018
Biotype: antisense
Gene id: ENSG00000255069
Gene Name: RP11-145O15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1088-1105
0.049
5
6mer
1378-1398
0.008
6
6mer
863-878
0.002
Not Conserved
XLOC_008555
hsa-miR-133b
0.949
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018281
Biotype: transcript isomorph
Gene id: XLOC_008555
Gene Name: XLOC_008555
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-135
0.059
2
TTN-AS1
hsa-miR-133b
0.949
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415561
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-434
0.059
1
XLOC_012427
hsa-miR-133b
0.949
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025599
Biotype: transcript isomorph
Gene id: XLOC_012427
Gene Name: XLOC_012427
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-245
0.057
0
6mer
2595-2611
0.002
Not Conserved
AC004112.4
hsa-miR-133b
0.947
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000431064
Biotype: antisense
Gene id: ENSG00000226851
Gene Name: AC004112.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-556
0.052
1
6mer
134-147
0.006
1
AC006548.28
hsa-miR-133b
0.947
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11203-11221
0.009
2
7mer
44873-44897
0.005
1
7mer
4609-4631
0.005
1
7mer
51206-51227
0.004
Not Conserved
6mer
49242-49263
0.002
Not Conserved
6mer
69690-69714
0.002
Not Conserved
6mer
81572-81598
0.002
1
6mer
47601-47605
0.002
Not Conserved
6mer
70613-70617
0.002
0
6mer
34541-34564
0.002
0
6mer
51007-51022
0.002
Not Conserved
6mer
24578-24589
0.002
1
6mer
14260-14286
0.002
0
6mer
21974-21996
0.001
1
6mer
37355-37370
0.001
0
6mer
45002-45019
0.001
1
6mer
49538-49563
0.001
Not Conserved
6mer
47912-47938
0.001
Not Conserved
6mer
44724-44738
0.001
1
6mer
43994-44021
0.001
0
6mer
68448-68459
0.001
0
6mer
10246-10270
0.001
1
6mer
46828-46850
0.001
Not Conserved
6mer
33800-33818
0.001
0
6mer
12635-12655
0.001
1
6mer
49043-49068
0.001
Not Conserved
6mer
49002-49006
0.001
Not Conserved
6mer
24498-24522
0.001
2
6mer
49195-49221
0.001
Not Conserved
RP11-1007G5.2
hsa-miR-133b
0.946
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525706
Biotype: antisense
Gene id: ENSG00000254588
Gene Name: RP11-1007G5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1160-1175
0.050
1
6mer
958-985
0.007
6
RP11-325D8.1
hsa-miR-133b
0.946
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554205
Biotype: lincRNA
Gene id: ENSG00000259028
Gene Name: RP11-325D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-527
0.057
0
RP11-875O11.2
hsa-miR-133b
0.945
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501897
Biotype: antisense
Gene id: ENSG00000246130
Gene Name: RP11-875O11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2601-2614
0.041
5
7mer
310-329
0.013
1
6mer
513-531
0.003
1
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